HsaALTA1006266-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56599129-56599848:-
Coord C1 exon
chr12:56599702-56599848
Coord A exon
chr12:56599356-56599358
Coord C2 exon
chr12:56599129-56599355
Length
3 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CACCTGTTTCCTATACTAAGCAG
3' ss Score
1.72
Exon sequences
Seq C1 exon
ACATGTCTAGTCTGCCGGAAGGGTGACAATGATGAGTTTCTTCTGCTTTGTGATGGGTGTGACCGTGGCTGCCACATTTACTGCCATCGTCCCAAGATGGAGGCTGTCCCAGAAGGAGATTGGTTCTGTACTGTCTGTTTGGCTCAG
Seq A exon
CAG
Seq C2 exon
GTGGAGGGAGAATTCACTCAGAAGCCTGGTTTCCCAAAGCGTGGCCAGAAGCGGAAAAGTGGTTATTCGCTGAACTTCTCAGAGGGTGATGGCCGCCGACGCCGGGTACTGTTGAGGGGCCGAGAAAGCCCAGCAGCAGGGCCTCGGTACTCGGAAGAAGGGCTCTCCCCCTCCAAGCGGCGGCGACTCTCTATGCGGAACCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-77-87,77-86-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0062824=PHD=WD(100=100.0)
A:
NA
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTCCCAAGATGGAGGCTG
R:
GGAAACCAGGCTTCTGAGTGA
Band lengths:
96-99
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains