HsaEX6067197 @ hg38
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56599129-56603700:-
Coord C1 exon
chr12:56603520-56603700
Coord A exon
chr12:56603359-56603418
Coord C2 exon
chr12:56599129-56599358
Length
60 bp
Sequences
Splice sites
3' ss Seq
GCCCATGTGTTTCTCCCTAGGTT
3' ss Score
12.07
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCTGAAAACTGTTCTGGCCAAGCGAACTGGGCGGTCTGAAGTAGAGATGGAAGGGCCAGAGGAATGCCTGGGACGGAGGCGCAGTTCTCGGATCATGGAGGAGACCAGTGGCATGGAAGAAGAGGAAGAAGAGGAGTCTATAGCAGCTGTCCCTGGCCGCAGGGGTCGAAGAGATGGAGAG
Seq A exon
GTTGATGCCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTCAGCAAG
Seq C2 exon
CAGGTGGAGGGAGAATTCACTCAGAAGCCTGGTTTCCCAAAGCGTGGCCAGAAGCGGAAAAGTGGTTATTCGCTGAACTTCTCAGAGGGTGATGGCCGCCGACGCCGGGTACTGTTGAGGGGCCGAGAAAGCCCAGCAGCAGGGCCTCGGTACTCGGAAGAAGGGCTCTCCCCCTCCAAGCGGCGGCGACTCTCTATGCGGAACCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108_MULTIEX1-6/16=5-15
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.774 A=0.390 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTATAGCAGCTGTCCCTGGC
R:
GGCCATCACCCTCTGAGAAGT
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains