HsaEX6067197 @ hg19
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56996497-56997484:-
Coord C1 exon
chr12:56997304-56997484
Coord A exon
chr12:56997143-56997202
Coord C2 exon
chr12:56996497-56996641
Length
60 bp
Sequences
Splice sites
3' ss Seq
GCCCATGTGTTTCTCCCTAGGTT
3' ss Score
12.07
5' ss Seq
AAGGTATTG
5' ss Score
7.76
Exon sequences
Seq C1 exon
GCTGAAAACTGTTCTGGCCAAGCGAACTGGGCGGTCTGAAGTAGAGATGGAAGGGCCAGAGGAATGCCTGGGACGGAGGCGCAGTTCTCGGATCATGGAGGAGACCAGTGGCATGGAAGAAGAGGAAGAAGAGGAGTCTATAGCAGCTGTCCCTGGCCGCAGGGGTCGAAGAGATGGAGAG
Seq A exon
GTTGATGCCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTCAGCAAG
Seq C2 exon
CGTCAGCTTTTCTTTCGCAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCGGTCTCCCTGGGTCAGGACCGCTACAGACGTCGCTACTGGGTATTGCCGTATTTGGCTGGTATCTTTGTAGAAGGAACAGAGGGGAACTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-'23-28,'23-27,24-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCATGGAGGAGACCAGT
R:
TCTGGGATGAGTGAAGCAGCT
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)