GgaEX0019024 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38202763-38206174:-
Coord C1 exon
chr7:38205931-38206174
Coord A exon
chr7:38204111-38204173
Coord C2 exon
chr7:38202763-38202907
Length
63 bp
Sequences
Splice sites
3' ss Seq
GGTATGTTTGGTGATTATAGGAT
3' ss Score
2.52
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
Seq A exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
Seq C2 exon
CAACAAAGCCAGTACAGAAAGAAGTTATTTGAAGCCTCACATTGTTTGCGTTCAATGATGTTTGGTCAAGATCGTTACAGGCGCCGGTATTGGATTCTGCCCCAGTGTGGTGGCATTTTTGTAGAAGGCATGGAAAGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX1-22/23=21-23
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=0.952 C2=0.082
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(20.9=100)
A:
PF0334410=Daxx=FE(5.2=100)
C2:
PF0334410=Daxx=FE(12.4=100),PF156131=WHIM2=WD(100=59.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGAAGTTTGTGAGGATG
R:
CACACTGGGGCAGAATCCAAT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]