GgaEX0019024 @ galGal4
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
bromodomain adjacent to zinc finger domain protein 2B [Source:RefSeq peptide;Acc:NP_990008]
Coordinates
chr7:36066426-36069837:-
Coord C1 exon
chr7:36069594-36069837
Coord A exon
chr7:36067774-36067836
Coord C2 exon
chr7:36066426-36066570
Length
63 bp
Sequences
Splice sites
3' ss Seq
GGTATGTTTGGTGATTATAGGAT
3' ss Score
2.52
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
TCTTAGAATCATTCATGCCAAAAAAACTGGCAAAAGAGATGCTACAGGAGGTGGTGAAGTAGGAGAGGAGCCGCATTCTTTGGAAACACCAACACCAGGCCGCAAACGGAGACGAAAGGGTGGGGATAGTGATTATGATGATGATGATGACGATGATAGTGATGATCAGGCAGATGAGGATGATGAGGATGAAGAGGACAAAGAAGATAAAAAAGGAAAGAAGGCGGAAGTTTGTGAGGATGAG
Seq A exon
GATGATGGAGACCAGACAGTGAGTGTTGAAGAACTAGAGAAGCAGATTGAAAAACTGACAAAG
Seq C2 exon
CAACAAAGCCAGTACAGAAAGAAGTTATTTGAAGCCTCACATTGTTTGCGTTCAATGATGTTTGGTCAAGATCGTTACAGGCGCCGGTATTGGATTCTGCCCCAGTGTGGTGGCATTTTTGTAGAAGGCATGGAAAGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579_MULTIEX3-11/11=10-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.903 A=0.952 C2=0.082
Domain overlap (PFAM):
C1:
PF0334410=Daxx=FE(20.9=100)
A:
PF0334410=Daxx=FE(5.2=100)
C2:
PF0334410=Daxx=FE(12.4=100),PF156131=WHIM2=WD(100=59.2)
Main Skipping Isoform:
ENSGALT00000020542fB5375
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCGGAAGTTTGTGAGGATG
R:
CACACTGGGGCAGAATCCAAT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]