DreEX0016649 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11743291-11744574:+
Coord C1 exon
chr6:11743291-11743513
Coord A exon
chr6:11743603-11743665
Coord C2 exon
chr6:11744430-11744574
Length
63 bp
Sequences
Splice sites
3' ss Seq
AGTTTGTGCGTGTGCGTCAGGAT
3' ss Score
4.47
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATGAAAACAATCTACGCAAAGCGGACAGGGAAACGGGAATCAATGACTGGAGGGGAGGAGCCTCACGCTGCCGGAGGCTCTGCCATCGGTCACAAACGCAAGAGGAAGGCGGGCGATAGTGATGATGACGATGATGAAGATGAGGACAGCGATGAGGATGAGGATGATGAGGAGGAGGAGGAAGAGACTAAAAAGGGAAGGAGGGTGGAGACATGCGATGAG
Seq A exon
GATGAGGGAGACCCAGCCACTAGTGTTGAAGAGCTGGAGAAACAGATTGAAAAGATATCAAAG
Seq C2 exon
CAACAAAACCTAATCCGCCGGAAGCTGTTTGAGTCGTCTCACGCCCTGCGGTCCATGTCATATGGACAAGACCGGTTCCGCCGCAGATACTGGATCCTGCCACAGTGTGGAGGAGTTTACATAGAGGCCTTAGAGAGTGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'36-32,'36-31,37-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=0.857 C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGGGAAGGAGGGTGGAGAC
R:
ACACTGTGGCAGGATCCAGTA
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]