RnoEX6016966 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45989085-45992152:-
Coord C1 exon
chr3:45991909-45992152
Coord A exon
chr3:45990175-45990237
Coord C2 exon
chr3:45989085-45989229
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTGTTTTATTATTTTTAGGAT
3' ss Score
10.7
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GCTTAGGATAATCCATGCTAAGAAAACAGGCAAGAGAGATGCTTCAGGGGGCATTGATCTTGGGGAAGAGCAACATCCCTTGGGCACGCCGACTCCAGGACGCAAGCGGAGAAGGAAGGGAGGAGACAGTGATTATGATGATGATGACGATGATGACAGCGATGACCAAGCCGATGAGGATGAGGAAGATGACGAAGATAAGGATGACAAAAAAGGAAAGAAGACCGATATCTGCGAAGATGAG
Seq A exon
GATGAAGGTGACCAAACAGCCAGTGTTGAGGAGCTCGAAAAGCAGATTGAAAAACTGAGCAAG
Seq C2 exon
CAACAGAGCCAGTACAGACGGAAGCTCTTTGATGCTTCTCACTCATTACGCTCGATGATGTTTGGCCAGGACCGATACCGACGCAGATACTGGATTCTTCCTCAGTGTGGAGGGATTTTTGTAGAAGGCATGGAAAGCGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'46-49,'46-48,48-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.854 A=0.952 C2=0.327
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=59.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCAAGCCGATGAGGATGAG
R:
GGCCAAACATCATCGAGCGTA
Band lengths:
148-211
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]