HsaEX6016161 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160229556-160239313:-
Coord C1 exon
chr2:160239070-160239313
Coord A exon
chr2:160231202-160231264
Coord C2 exon
chr2:160229556-160229700
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGTATTTTCTTATGTATAGGAT
3' ss Score
8.11
5' ss Seq
AAAGTAAGC
5' ss Score
7.31
Exon sequences
Seq C1 exon
GCTCAGAATCATTCATGCTAAGAAAACAGGCAAAAGAGACACTTCAGGTGGCATTGATCTGGGAGAAGAGCAGCATCCCTTGGGCACACCCACTCCAGGACGCAAGCGAAGAAGGAAGGGAGGAGACAGTGATTATGACGATGATGATGACGATGACAGTGATGACCAAGGGGATGAAGATGATGAGGATGAAGAAGATAAAGAAGACAAAAAAGGAAAAAAGACTGATATCTGTGAAGATGAG
Seq A exon
GATGAAGGTGACCAAGCAGCAAGTGTTGAAGAGCTGGAAAAACAGATTGAAAAACTGAGTAAA
Seq C2 exon
CAACAGAGTCAGTACAGAAGGAAGCTCTTTGATGCGTCTCACTCATTGCGTTCAGTGATGTTTGGCCAAGATCGTTACAGACGCCGGTACTGGATTCTTCCCCAATGTGGGGGGATTTTTGTAGAAGGCATGGAGAGTGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'44-43,'44-42,45-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.866 A=0.952 C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=59.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGTGATGACCAAGGGGA
R:
AACGCAATGAGTGAGACGCAT
Band lengths:
143-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)