DreEX0016638 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6763448-6766669:-
Coord C1 exon
chr23:6766498-6766669
Coord A exon
chr23:6764065-6764127
Coord C2 exon
chr23:6763448-6763592
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATAGATTTTTTTCTGACAGATT
3' ss Score
7.51
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
ACTGAAGGCTGCACTGGTGCGCAAGACGGGTCGTCCTGAGGAGGAGCTGGTCTTTGAGGAGCGTCGGCGCAGTGCTCGCGTTGGAGTAGCAGAGGAGGAGAGTATTGAAGAGAGCTGTGTGCTGGAGCGAGGGAGTCGACGCAAGGCCAAAGAGGAGCCCAAACACACTGAG
Seq A exon
ATTGAGAGTCCTAATACCTGCAGTGTTGCTGAGCTGGAGCGCCAGATTGATAAACTAACCAAG
Seq C2 exon
CGTCAGGTGTTTTTCCGCAAGAAGCTGCAGCAGTCGTCTCATTCTATGCGAGCCGTGTCTCTCGGACAGGACCGGTACCGCCGCAGGTACCTCCTGCTTCCATACATGGGATGTATCCTAGTGGAGGGAGCAGAGGATATCTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'24-28,'24-27,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.168 A=0.209 C2=0.051
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGAGTAGCAGAGGAGGA
R:
AGAATGAGACGACTGCTGCAG
Band lengths:
139-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]