MmuEX6052077 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127558856-127559506:+
Coord C1 exon
chr10:127558856-127559036
Coord A exon
chr10:127559124-127559183
Coord C2 exon
chr10:127559362-127559506
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTCCGCTTGTTTCTGTGCAGATT
3' ss Score
9.64
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGCCTGAGGTTATGATGGAAGGGGCAGAAGACGGCCTAGGACGGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTGGCATAGAAGAGGAGGAAGAGGAAGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAGGAGAG
Seq A exon
ATTGATGTTGCAGCATCTAGCATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAGTAAG
Seq C2 exon
CGTCAGCTCTTCTTTAGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTATAGACGCCATTACTGGGTATTACCGTATCTTGCTGGTATCTTTGTGGAAGGATCGGAAGGGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'29-36,'29-35,31-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=0.200 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGTTCTCGGATCATGGAG
R:
TCTGGGATGAGTGAAGCAGCT
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: