BtaEX6022177 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57154316-57154998:+
Coord C1 exon
chr5:57154316-57154496
Coord A exon
chr5:57154597-57154656
Coord C2 exon
chr5:57154854-57154998
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTGTCTCGTTTCTTCTCCAGGTT
3' ss Score
11.3
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATTGAAAACTGCTTTGGCCAAGCGAACGGGGCGACCTGAGGTAGAGCTACAGGGGCCAGAGGAAGGCCTGGGGCGGAGGCGCAGTTCTCGGATCATGGAGGAGACCAGTGGCATGGAAGAGGAGGAAGAGGAAGAGACTGCAGCTGCTGTCCATGGCCGTAGGGGTCGAAGGGATGGAGAG
Seq A exon
GTTGATATCACAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAAAAACTGAGCAAG
Seq C2 exon
CGTCAGCTCTTCTTTCGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGAGCAGTCTCCTTGGGTCAGGACCGCTACAGACGCCGCTACTGGGTGTTGCCCTACTTGACTGGTATCTTTGTGGAAGGAACAGAGGGAAGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'28-34,'28-31,29-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.350 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCATGGAGGAGACCAGT
R:
GCTCGAAGCATCTGGGATGAG
Band lengths:
146-206
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]