RnoEX0014169 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2542915-2543574:+
Coord C1 exon
chr7:2542915-2543095
Coord A exon
chr7:2543196-2543255
Coord C2 exon
chr7:2543430-2543574
Length
60 bp
Sequences
Splice sites
3' ss Seq
ATCTGCTCGTCTCTGTGCAGGTT
3' ss Score
10.15
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ACTGAAAACTGCCCTAGCCAAGCGAACTGGGCGGCCTGAAGTTATGATGGAAGGGGTAGATGACAGCCTGGGACGGAGGCGCAGCTCTCGGATCATGGAGGAGACCAGTGGCATAGAAGAGGAGGAAGAGGAGGAAAATACAGTAGCTGTTCATGGCCGCAGGGGTCGAAGAGATGGGGAG
Seq A exon
GTTGATGTTGCAGCATCTAGCATCCCAGAGCTAGAGCGCCAGATAGAGAAACTCAGTAAG
Seq C2 exon
CGTCAGCTCTTCTTTAGAAAAAAACTGCTTCACTCGTCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTTTAGACGCCATTACTGGGTCTTACCGTGTCTTGCTGGTATCTTTGTGGAAGGATCAGAGGGGAGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'24-34,'24-33,25-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.639 A=0.400 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGATCATGGAGGAGACCAGT
R:
ATCTGGGACGAGTGAAGCAGT
Band lengths:
137-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]