MmuEX6052077 @ mm10
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:128121800-128122450:+
Coord C1 exon
chr10:128121800-128121980
Coord A exon
chr10:128122068-128122127
Coord C2 exon
chr10:128122306-128122450
Length
60 bp
Sequences
Splice sites
3' ss Seq
GTCCGCTTGTTTCTGTGCAGATT
3' ss Score
9.64
5' ss Seq
AAGGTACCA
5' ss Score
7.87
Exon sequences
Seq C1 exon
ACTGAAAACTGCTCTGGCCAAGCGAACTGGGCGGCCTGAGGTTATGATGGAAGGGGCAGAAGACGGCCTAGGACGGAGGCGCAGTTCTCGGATCATGGAGGAAACCAGTGGCATAGAAGAGGAGGAAGAGGAAGAAAATACAACAGCTGTCCATGGCCGCAGGGGTCGAAAAGAAGGAGAG
Seq A exon
ATTGATGTTGCAGCATCTAGCATTCCAGAGCTAGAGCGCCATATAGAAAAACTCAGTAAG
Seq C2 exon
CGTCAGCTCTTCTTTAGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTATAGACGCCATTACTGGGTATTACCGTATCTTGCTGGTATCTTTGTGGAAGGATCGGAAGGGAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'34-50,'34-49,37-50=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.803 A=0.200 C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF156131=WHIM2=WD(100=61.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGTTCTCGGATCATGGAG
R:
TCTGGGATGAGTGAAGCAGCT
Band lengths:
145-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types