HsaEX6067201 @ hg38
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56599129-56601402:-
Coord C1 exon
chr12:56601246-56601402
Coord A exon
chr12:56600943-56601098
Coord C2 exon
chr12:56599129-56599358
Length
156 bp
Sequences
Splice sites
3' ss Seq
TATATCTCATCTGCTCACAGAGA
3' ss Score
7.93
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
Exon sequences
Seq C1 exon
ATGAATAGACCTAGTGCTGCCAACCCTTGTTCTCCAGTGCAGTTCTCTTCCACGCCCTTGGCTGGGTTGGCCCCTAAGAGGCGAGCAGGAGACCCTGGAGAAATGCCACAGAGTCCCACAGGGCTGGGACAGCCCAAACGGAGAGGGAGACCTCCCA
Seq A exon
AGATGTGCTCAGGCTGGTGGTGGATACGAGATCCTGAGATGTTGGATGCCATGCTCAAGGCCCTACACCCCCGAGGTATCCGGGAGAAGGCACTTCACAAACACCTTAACAAGCACAGGGACTTCTTGCAGGAAGTCTGCCTGCGGCCCTCAGCTG
Seq C2 exon
CAGGTGGAGGGAGAATTCACTCAGAAGCCTGGTTTCCCAAAGCGTGGCCAGAAGCGGAAAAGTGGTTATTCGCTGAACTTCTCAGAGGGTGATGGCCGCCGACGCCGGGTACTGTTGAGGGGCCGAGAAAGCCCAGCAGCAGGGCCTCGGTACTCGGAAGAAGGGCTCTCCCCCTCCAAGCGGCGGCGACTCTCTATGCGGAACCACCACAGTGATCTCACATTTTGCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108_MULTIEX1-10/16=9-15
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.895 A=0.141 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=79.2)
C2:
PF0043920=Bromodomain=PU(1.2=1.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTGCAGTTCTCTTCCACG
R:
TTTCTCGGCCCCTCAACAGTA
Band lengths:
254-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains