GgaEX0019026 @ galGal3
Exon Skipping
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38197451-38198652:-
Coord C1 exon
chr7:38198376-38198652
Coord A exon
chr7:38198063-38198218
Coord C2 exon
chr7:38197451-38197611
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTATGTTTCTCTTGCTTTAGAAA
3' ss Score
8.65
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
Exon sequences
Seq C1 exon
CAGATGAAGCCTGGACTACCTGTCATGGGACTTCAGTTTTGTGGATGGCCTACAGGAGTTCTTACTTCAAATGTTCAGTTTTCATCTCCTTTACCTACTCTTGGATCAGGGTTGGGATTATCAGAAGGGAATGGTAACTCATTCTTGACATCTAGTGTTCCTACAAGTAAAAGTGAATCACCAGCACTGCAGACTGAGAAAGTAGCTTCTGCCACCTGTACAGCAGTGGAAGTGGCCAAGCCAGTAGATCACCCAAACCCAAAACCAATACCAGAAG
Seq A exon
AAATGCAGTATGGGTGGTGGAGGATTACTGATCCTGAGGACCTAAAATCTTTGCATAAAGTGCTGCATCTCAGGGGAATAAGAGAAAAGGCCTTACAAAAACAAATACAGAAACACATGGACTATATCACTCTGGCCTGCATCAAAAATAAGGATG
Seq C2 exon
TTGCAATTATTGATATCAATGAAAATGAAGATAACCAGGTAACTCGAGATGTTGTGGAAAACTGGTCAGTAGAAGAGCAAGCAATGGAGGTGGACCTTGCTATTCTTCAGCAGGTGGAAGACCTAGAGAGGAGAGTTGCATCAGCTAGTTTGCAAGTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579-'41-47,'41-45,42-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.570 A=0.075 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCACCAGCACTGCAGACTG
R:
AGCTGATGCAACTCTCCTCTCT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]