MmuEX6101477 @ mm9
Exon Skipping
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59749739-59751062:-
Coord C1 exon
chr2:59750786-59751062
Coord A exon
chr2:59750459-59750614
Coord C2 exon
chr2:59749739-59749899
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGTGTGCTCTCTTGACTTAGAAA
3' ss Score
8.25
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTGAAAGGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGAGTGCTCGCTTCCAACGTCCCATTTACATCACCTTTGCCTGCTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGCAGTAGTTCATTCTTGACTTCCAGTGTTGCTTCAAGTAAAAGTGACTCTCCAGTCCCTCCAGCTGAAAGACCCTCCAGCGCTCAGCCAGTGGCTGTTGAAGTAGCAAAGCCAGTAGATTTTCCTAGTCCCAAACCTATCCCAGAAG
Seq A exon
AAATGCAGTTCGGATGGTGGAGAATCATTGACCCCGAGGACCTGAAGACATTGCTCAAAGTGCTGCACCTCCGCGGGATCCGGGAAAAGGCATTGCAAAAGCAAATTCAGAAACACTTGGATTACATTACCCAAGCCTGTGTCAGGAACAAGGACG
Seq C2 exon
TCGCTATTATTGAATTAAACGAAAATGAAGACAATCAGGTAACCCGCGATCTAGTGGAGAACTGGTCGGTCGAAGAGCAAGCAATGGAGCTGGACCTGAGCATACTCCAGCAGGTGGAGGACTTGGAACGGAGGGTTGCATCAGCGAGTTTGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987-'60-52,'60-50,61-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=0.000 C2=0.106
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACTGCCAGAAGGAAATGG
R:
TCCATTGCTTGCTCTTCGACC
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: