RnoEX6016969 @ rn6
Exon Skipping
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:45981558-45982855:-
Coord C1 exon
chr3:45982579-45982855
Coord A exon
chr3:45982255-45982410
Coord C2 exon
chr3:45981558-45981718
Length
156 bp
Sequences
Splice sites
3' ss Seq
TAAATACTGTCTTGATGCAGAGA
3' ss Score
6.3
5' ss Seq
ACGGTGTGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
GTGAAGAGTGGTGTGTCTATGATGGGACTTCAGTTCTGTGGGTGGCCTGCTGGTGTGCTCACTTCCAGTGTCCCATTTACATCACCCTTGCCTGGTCTCGGCTCAGGGTTGGGACTGCCAGAAGGAAATGGTAGCAGCTCATTCTTGAATTCCAGTGTTGCTTCCAGTAAAAGTGAATCTCCAATCCCTCCAGCTGAAAAGGCCTCCACCGCCACACCAGCCGCTGTTGAAGTAGCAAAACCAGTAGATTTTCCTATTCCGAAGCCTATCCCAGAAG
Seq A exon
AGATGCAGCTCGGCTGGTGGAGAATCATGGACCCCGAGGACCTGAGGACGTTGCTGAAGGTGCTGCACCTCCGAGGGCTACGGGAAAAGGCCCTGCAGAAGCAAGTGCAGAAGCACCTGGACTACATTACTCACGCCTGTGCCAAGAATAAGGACG
Seq C2 exon
TTGCTATTATTGAATTAAATGAGAATGAAGAAAATCAGGTAACGCGCGATTTAGTGGAGAACTGGTCGGTAGAAGAGCAGGCGATGGAGCTGGACCTGAGCATTCTCCAGCAAGTGGAGGACCTGGAACGCAGGGTTGCATCCGCAAGCTTGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984-'51-56,'51-55,52-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACATCACCCTTGCCTGGTCT
R:
TCCACTAAATCGCGCGTTACC
Band lengths:
258-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]