DreEX0000792 @ danRer10
Exon Skipping
Gene
ENSDARG00000082979 | BAZ2B (2 of 2)
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr9:52408928-52409911:+
Coord C1 exon
chr9:52408928-52409186
Coord A exon
chr9:52409470-52409625
Coord C2 exon
chr9:52409751-52409911
Length
156 bp
Sequences
Splice sites
3' ss Seq
TATGTGTTATTGTGTTGTAGAGA
3' ss Score
8.33
5' ss Seq
ACGGTACCA
5' ss Score
5.45
Exon sequences
Seq C1 exon
AAGTCTGGCATGCCCATATTAGATCTGCCGTTCTGCGCTTGGCCCAATGGAGGTTTGAGACCAAACATGTCGTTCTCTGGGGTCTCCATGGCTCAGATTCTCAGTGGTTGTGGTCTGCTTTCAGAGGACACTAAAAACCTGAGCAATAAAAAGAGTGAAGCTCCTGAATCTCCAACAGAGAAAGCCCTCTCTACACCTTCACCTGTGATCGAGGCGGTGAAAAACCATGATTACCCGTTACCGCAACCCATTCCTGAAG
Seq A exon
AGATGTTGACCGGCTGGTGGAAAGTGTCCTCTGTGGAGGAGCTGCGGTCCATAGAAAAAGCCTGTCATCCCAGAGGGGTTCGAGAGAAGCAGCTGCAGAAACAGCTGCAGAAACACATGGACTATATAGCTCTGATCTGCAGCAGAAACAGAGACG
Seq C2 exon
TGTCTGTGATGGAGGTCTCGCAGCTGAAGCACAATGGTCTCACTGAGGAGACAGTGCAACACTGGTGTGTGGAGGAGCAGGCCATGGAGGTGGACATCAGTGTCCTGCAGCAGGTGGAGGAGCTCCAGCACAGGGTCACCTCTGCCAGCCTGCAAGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000082979_MULTIEX1-13/13=12-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.368 A=0.151 C2=0.222
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=73.6)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGCCCAATGGAGGTTTGAG
R:
CATTGTGCTTCAGCTGCGAGA
Band lengths:
257-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]