HsaEX6016165 @ hg38
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:159347486-159349280:-
Coord C1 exon
chr2:159349007-159349280
Coord A exon
chr2:159348678-159348833
Coord C2 exon
chr2:159347486-159347646
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTATCTTGACTTAGAAA
3' ss Score
5.63
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GTGAAAGGTGGAGTATCTATGATGGGACTTCAGTTTTGTGGATGGCCCACTGGTGTGGTTACTTCTAATATTCCATTTACATCATCTGTACCTAGTCTAGGATCGGGGTTAGGGTTATCAGAAGGAAATGGTAATTCATTCTTGACTTCCAATGTTGCTTCAAGTAAAAGTGAATCTCCAGTACCACAGAATGAAAAGGCCACTTCAGCTCAACCTGCAGCTGTTGAAGTAGCAAAACCAGTAGATTTTCCTAGTCCAAAACCTATTCCAGAAG
Seq A exon
AAATGCAGTTTGGTTGGTGGAGAATTATTGACCCAGAGGACCTAAAAGCTTTGCTCAAAGTGCTGCATCTCAGAGGAATAAGAGAAAAGGCATTACAAAAACAAATTCAGAAACATTTGGATTATATTACTCAAGCCTGCCTCAAGAATAAGGATG
Seq C2 exon
TTGCTATTATTGAACTGAATGAAAATGAAGAAAACCAAGTAACTCGAGATATTGTGGAGAACTGGTCAGTAGAAGAACAAGCAATGGAAATGGATTTGAGTGTCCTTCAACAGGTAGAAGATCTAGAAAGGAGAGTTGCATCAGCAAGTTTGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'115-93,'115-92,116-93
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.000 C2=0.118
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGATCGGGGTTAGGGT
R:
TCTACTGACCAGTTCTCCACA
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains