HsaEX6016165 @ hg19
Exon Skipping
Gene
ENSG00000123636 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:963]
Coordinates
chr2:160203997-160205791:-
Coord C1 exon
chr2:160205518-160205791
Coord A exon
chr2:160205189-160205344
Coord C2 exon
chr2:160203997-160204157
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACTTATTTATCTTGACTTAGAAA
3' ss Score
5.63
5' ss Seq
ATGGTGTGT
5' ss Score
4.84
Exon sequences
Seq C1 exon
GTGAAAGGTGGAGTATCTATGATGGGACTTCAGTTTTGTGGATGGCCCACTGGTGTGGTTACTTCTAATATTCCATTTACATCATCTGTACCTAGTCTAGGATCGGGGTTAGGGTTATCAGAAGGAAATGGTAATTCATTCTTGACTTCCAATGTTGCTTCAAGTAAAAGTGAATCTCCAGTACCACAGAATGAAAAGGCCACTTCAGCTCAACCTGCAGCTGTTGAAGTAGCAAAACCAGTAGATTTTCCTAGTCCAAAACCTATTCCAGAAG
Seq A exon
AAATGCAGTTTGGTTGGTGGAGAATTATTGACCCAGAGGACCTAAAAGCTTTGCTCAAAGTGCTGCATCTCAGAGGAATAAGAGAAAAGGCATTACAAAAACAAATTCAGAAACATTTGGATTATATTACTCAAGCCTGCCTCAAGAATAAGGATG
Seq C2 exon
TTGCTATTATTGAACTGAATGAAAATGAAGAAAACCAAGTAACTCGAGATATTGTGGAGAACTGGTCAGTAGAAGAACAAGCAATGGAAATGGATTTGAGTGTCCTTCAACAGGTAGAAGATCTAGAAAGGAGAGTTGCATCAGCAAGTTTGCAAGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000123636-'48-47,'48-46,49-47=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.000 C2=0.127
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=75.5)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTAGGATCGGGGTTAGGGT
R:
TCTACTGACCAGTTCTCCACA
Band lengths:
253-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)