DreEX6020945 @ danRer10
Exon Skipping
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11751048-11755339:+
Coord C1 exon
chr6:11751048-11751315
Coord A exon
chr6:11753979-11754134
Coord C2 exon
chr6:11755179-11755339
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGGTTTTGGCTGTTTGGCAGACA
3' ss Score
5.23
5' ss Seq
AGGGTGAGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GTGAAGCCAGGTGCAGCTCTGGTGGGTTTGCCTTTGTACAGCTGGTCTGGTGGGGTCATCAGCCCCAATCTCCCCCTGTGCAGCAGCCCCCTGCACATGTACCCATCAGTAGAGGGCAGCGCCAGCCCCCTCCTGGCACCCAGCGTCTCAACCAGCAAAAGTGGCTCTCCTGTTCCCACCGCGGAGAAGCTGGCATCTGCTCCTTCTCCAGTGGCGCTGGACCTTCCCAGAAATCATGACCTGCCTGAGCCAATGGCCATACCAGAGG
Seq A exon
ACATGCTGCTGGGCTGGTGGAAGGTGACAGACATGGAGGAGCTGAAAGCGCTAGTGAACTCTCTTCACAGCAGAGGTATCCGAGAGAGAGCCCTGCAGAAACAGCTGCAGAAGTCCATGGAGCTCATCGTACAGACCTGCAACAAGAACCGAGAGG
Seq C2 exon
TGGCAGTTATGGAGGTCTCAGAGCTCGACGAGGGCCAGGTTTCCGTGGAGACGCTGCAGGAGTGGTGCGTGGAGGAACAGGCCATGGAGACTGACATTGCTCTGCTGCAGCAGGTGGAGGAGCTGGAGCGCAAAGTCACGTCTGCCAGCCTGCAGGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782-'40-38,'40-36,42-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=0.023 C2=0.139
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGTCTGGTGGGGTCATCA
R:
GTCGAGCTCTGAGACCTCCAT
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]