RnoEX6030138 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2545276-2546000:+
Coord C1 exon
chr7:2545276-2545498
Coord A exon
chr7:2545617-2545772
Coord C2 exon
chr7:2545849-2546000
Length
156 bp
Sequences
Splice sites
3' ss Seq
TGCTTATCCTCTGTACATAGATA
3' ss Score
7.5
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ATGAATACACCAGGTGCTGCCAATCCTTGTTCTCCAGTGCAGCTTTCTTTCACCCACTTACCTGGAGGGGGCCCTAAGAGGCTATCTGGGGACTCTGAAGAAATACCACAGAGTCCCACAGGGCTGGGACAACCAAAACGGAGAGGGAGACCTCCTAGCAAGTTCTTCAAGCAGGTGGAGCAACATTACTTAACCCAGCTGACAGCCCAGCCTATCCCCCCTG
Seq A exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
Seq C2 exon
ACCCCATCTTTGAGCCCAGTCAGCTGCCTGCCTTGGAAGAAGGAATTATGAGTTGGTCCCCCAAAGAGAAAACTTTCGAGACAGACCTGGCTGTGCTTCAGTGGGTGGAGGAGCTAGAACGGCGAGTCGTCCTCTCTGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'30-41,'30-40,35-41=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.000 C2=0.020
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATACACCAGGTGCTGCCAA
R:
GCTGACTGGGCTCAAAGATGG
Band lengths:
245-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]