DreEX0016640 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6756469-6760429:-
Coord C1 exon
chr23:6760198-6760429
Coord A exon
chr23:6758007-6758162
Coord C2 exon
chr23:6756469-6756629
Length
156 bp
Sequences
Splice sites
3' ss Seq
AATGTGTTTGTGTGCTGCAGAGA
3' ss Score
8.18
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GTTACAACAGAAGCACTTCCTCTTACATTTCCACTTCCGGTTTCTGTTCCCGTTCCTCTGTCGAGCTCTGCCCCGGCTCCTCGTGGCAGACGGCGCAGGAGAGGCAGCGGGCCCTCCCGAGTGCACTCTAGAACCGGCACGGCCAAACGGCGTGGCAGACCTCCCTCCAAACTCTTCCAGGAGGTCCAGCTCAAGTACTTCACTCAACTGGTGGTCCGACCTATTCCGTTAG
Seq A exon
AGATGGTGAAGGGCTGGTGGTGGATCAGAGAACCAGAGGAGCTGACGGCCATTCTGAGCGCTCTTCACCCGCGGGGCATTCGAGAGAAGATGCTTCACAAACACCTCAGTAAACACATGGAGTATCTAGCCGAGGTCTGCACACGCTCTGTAAACG
Seq C2 exon
ATCCGATCTTCCAGATGAAGGTGGAGGACGGGGATGCCCTGCAGGAGGTGAGTAAGCAGGAGTGGCAGGAGCAGGAGCGGGTGCTGCAGCTGGACATCAGTGTTCTCCAGTGGGTGGAGGACCTGGAGCAGAGGGTGGTCGGTGCAGACCTGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'30-37,'30-36,31-37
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=0.000 C2=0.046
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=73.6)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCTGTTCCCGTTCCTC
R:
TCCTGCTTACTCACCTCCTGC
Band lengths:
256-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]