BtaEX6022173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57156339-57157083:+
Coord C1 exon
chr5:57156339-57156561
Coord A exon
chr5:57156664-57156819
Coord C2 exon
chr5:57156932-57157083
Length
156 bp
Sequences
Splice sites
3' ss Seq
ATTACACAAACTGTTCACAGAGA
3' ss Score
4.61
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
GTGAGTAGAGCCAGTGCTGCCAACGCCTATTCTCCAGGGCCATTCTCTTCTACTCCTTTGCTGGGCATGGCTCATAAAAGGCAAGCAGGAGATCCTGGAGAAACACCACAGAGCCCCACAGGGCAAGGACAGCCAAAACGAAGAGGGAGACCTCCCAGTAAGTTCTTCAAACAGATGGAGCAGCGCTATCTAACCCAGCTGACAGCCCAGCCTGTCCCACCTG
Seq A exon
AGATGCGCTCTGGCTGGTGGTGGATCCGAGATCCTGAGACATTGGATGCCACGCTCAAGGCCTTGCACCCCCGAGGCATCCGAGAGAAAGCACTTCACAAACACCTAAACAAGCACAGGGACTTCTTACAGGAAGTCTGCCTACGGCCCTCAACAG
Seq C2 exon
ACCCCATCTTTGAGCCCAGTCAGCTACCTGCCTTTGAAGAAGGGATCGTGAGCTGGACCCCCAAAGAGAAGACATATGAGACAGACCTGGCTGTCCTTCAGTGGGTGGAGGAGCTGGAACAGCGGGTGATCCTGTCTGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'33-39,'33-38,34-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.907 A=0.132 C2=0.098
Domain overlap (PFAM):
C1:
NO
A:
PF156141=WHIM3=WD(100=79.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCAACGCCTATTCTCCAG
R:
CAAAGGCAGGTAGCTGACTGG
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]