MmuINT0025657 @ mm9

Intron Retention

Gene

ENSMUSG00000024335 | Brd2

Description

bromodomain containing 2 [Source:MGI Symbol;Acc:MGI:99495]

Coordinates

chr17:34251295-34252209:-

Coord C1 exon

chr17:34251835-34252209

Coord A exon

chr17:34251424-34251834

Coord C2 exon

chr17:34251295-34251423

Length

411 bp

Sequences

Splice sites

5' ss Seq

AAGGTACCC

5' ss Score

9.16

3' ss Seq

CATGCTGCCTCCTTCTGCAGCGG

3' ss Score

10.59

Exon sequences

Seq C1 exon

AAAAAAGGCGTTAAACGGAAAGCGGATACTACCACCCCTACACCCACAGCCATCCTGGCTCCTGGTTCCCCAGCTAGTCCTCCTGGGAGTCTTGAGCCAAAGGCAGCAAGGCTCCCTCCTATGCGCAGAGAGAGTGGCCGCCCAATCAAACCCCCACGAAAAGACTTGCCTGACTCGCAACAGCAACACCAGAGCTCTAAGAAAGGGAAGCTGTCAGAGCAGTTAAAGCACTGCAACGGCATCCTGAAGGAACTGCTCTCAAAGAAGCACGCTGCCTACGCCTGGCCCTTCTATAAGCCAGTGGACGCTTCTGCTCTTGGCCTTCATGATTACCATGACATCATTAAACACCCCATGGACCTCAGCACTGTCAAG

Seq A exon

GTACCCACTGCATGGGGCAGATGGGCTGCTCAGGCAGGGGCTGGAGCCTGGGGACCAATAAAGCAATACCCATGTCTCCTCATGGGAACATGGCAGTTTTTCATTCTGTGTATCTTACAAAGTTGTACAAAGTCACATACTTTGAAGTCCTTGTTTTTTACAGTTAAGGATAAGTGTGGGGTTAGGGAAATGTAATGGGAGAGAGATGGCCTTGGTCACTTAGAAATGTTTTCTTCTAGACATAGATATTTCTTCAAACCTACCCCAAATCTTTGGACTTCAAACTTGAACCCCAGGGCACAGATCCCTAAGGTCATCCCCACTTGTTTCAAGAGAGGGCTGCTTGAGTCGGGTTGGCAGGGAAAGATGAGACTCTGCCTGTGCAGCTTCTCATGCTGCCTCCTTCTGCAG

Seq C2 exon

CGGAAGATGGAGAACCGTGACTACCGGGATGCACAGGAGTTTGCTGCTGATGTACGGCTTATGTTCTCCAACTGCTATAAGTACAATCCTCCAGACCACGATGTTGTGGCTATGGCACGAAAGTTGCAG

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000024335-Brd2:NM_010238:7

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.645 A=NA C2=0.302

Domain overlap (PFAM):

C1:

PF0043920=Bromodomain=PU(67.4=96.7),PF062846=Cytomega_UL84=PU(24.3=93.3),PF103374=DUF2422=PU(21.8=90.0),PF060886=TLP-20=PU(10.6=36.7),PF0105613=Myc_N=PU(0.1=0.0),PF062137=CobT=PU(0.1=0.0),PF056426=Sporozoite_P67=PU(17.7=66.7)

A:

NA

C2:

PF0043920=Bromodomain=PD(44.9=93.0),PF090735=BUD22=FE(13.1=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000025193