MmuINT0027927 @ mm9
Intron Retention
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98471831-98472156:+
Coord C1 exon
chr15:98471831-98471889
Coord A exon
chr15:98471890-98472046
Coord C2 exon
chr15:98472047-98472156
Length
157 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TGTGCGGTCCGCCACTCCAGGAT
3' ss Score
6.66
Exon sequences
Seq C1 exon
GTCACGGACATGATGCAGAAGGCGCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAG
Seq A exon
GTAAGCTGCCCTGGTCTGGAACCGGGAGGAGAATCAATCAGGAGGAAAGTTAATTTCCCCCTTGTGCATGCCCGGAGCTAGTCTCCTCTCAAGGAGAGTCAGGGAGCTGGGTAAGGAGTGCTTGGCTTAGACGGCAGTGTGCGGTCCGCCACTCCAG
Seq C2 exon
GATCTCCATCACACGCGTCACGGCCGACCTCTCGCTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATTGAGCGCTCCTCCGCCCGCTCCAGCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352-Cacnb3:NM_007581:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.105
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
NA
C2:
PF0062516=Guanylate_kin=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACGGACATGATGCAGAAGG
R:
CGGAGGAGCGCTCAATGATG
Band lengths:
154-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: