MmuEX0008843 @ mm9
Exon Skipping
Gene
ENSMUSG00000003352 | Cacnb3
Description
calcium channel, voltage-dependent, beta 3 subunit [Source:MGI Symbol;Acc:MGI:103307]
Coordinates
chr15:98471831-98472521:+
Coord C1 exon
chr15:98471831-98471889
Coord A exon
chr15:98472047-98472156
Coord C2 exon
chr15:98472370-98472521
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTGCGGTCCGCCACTCCAGGAT
3' ss Score
6.66
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GTCACGGACATGATGCAGAAGGCGCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAG
Seq A exon
GATCTCCATCACACGCGTCACGGCCGACCTCTCGCTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATTGAGCGCTCCTCCGCCCGCTCCAGCATTG
Seq C2 exon
CTGAAGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAACTTGCCAAGACCTCACTGGCTCCCATCATCGTCTTTGTCAAAGTGTCCTCGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003352_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGGACATGATGCAGAAGG
R:
CTTTGGCGAGGACACTTTGAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: