DreEX0018230 @ danRer10
Exon Skipping
Gene
ENSDARG00000001881 | cacnb3a
Description
calcium channel, voltage-dependent, beta 3a [Source:ZFIN;Acc:ZDB-GENE-060221-2]
Coordinates
chr23:14400713-14403252:+
Coord C1 exon
chr23:14400713-14400771
Coord A exon
chr23:14402700-14402800
Coord C2 exon
chr23:14403101-14403252
Length
101 bp
Sequences
Splice sites
3' ss Seq
ATATTTTGTTATGCTGACAGGAT
3' ss Score
6
5' ss Seq
TGGGTGAGG
5' ss Score
6.74
Exon sequences
Seq C1 exon
GTGACAGACATGATGCAGAAAGCTCTGTTTGACTTTCTCAAACATCGCTTTGATGGACG
Seq A exon
GATTTCAATAACCCGAGTAACTGCTGACCTTTCACTGGCCAAGAGATCAGTTCTCAACAAGAGACCCATCATGGAGAGGTCAAACACACGGACCAGTTTGG
Seq C2 exon
CGGAAGTACAGAGTGAGATTGAGAGAATATTTGAGTTGGCCAAAACCCTTCAGCTGGTGATTCTGGATGCAGACACCATTAACCATCCAGCACAGCTAGCTAAAACCTCACTAGCACCTATTATTGTATATGTAAAGGTCACGTCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001881-'11-9,'11-8,12-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.286 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.7=100)
A:
PF0062516=Guanylate_kin=FE(19.1=100)
C2:
PF0062516=Guanylate_kin=FE(28.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACAGACATGATGCAGAAAGCT
R:
CTTTGGAGACGTGACCTTTACA
Band lengths:
210-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]