GgaEX1012540 @ galGal4
Exon Skipping
Gene
ENSGALG00000025788 | CACNB1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:HGNC Symbol;Acc:HGNC:1401]
Coordinates
chr27:4110834-4112184:-
Coord C1 exon
chr27:4112126-4112184
Coord A exon
chr27:4111655-4111764
Coord C2 exon
chr27:4110834-4110985
Length
110 bp
Sequences
Splice sites
3' ss Seq
AGCCTGTGTCCTTCTCACAGGAT
3' ss Score
9.49
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
Exon sequences
Seq C1 exon
GTGACAGATATGATGCAGAAAGCACTGTTTGATTTCTTGAAGCATCGCTTTGATGGCAG
Seq A exon
GATCTCCATCACGCGGGTGACGGCCGACATCTCCCTCGCCAAGCGCTCTGTGCTGAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACACGCTCCAGCCTGG
Seq C2 exon
CTGAGGTGCAGAGTGAGACGGAGCGCATCTTCGAGCTGGCCCGGACCCTGCAGCTGGTGGCCTTGGACGCCGACACCATCAACCACCCGGCCCAGCTGGCCAAGACCTCCCTGGCACCCATCATCGTCTACATCAAAATCGCCTCCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000025788-'7-15,'7-12,8-15
Average complexity
C1
Mappability confidence:
89%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.202 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGATATGATGCAGAAAGC
R:
TTTGGGGAGGCGATTTTGATGT
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]