DreEX6015706 @ danRer10
Exon Skipping
Gene
ENSDARG00000002167 | cacnb1
Description
calcium channel, voltage-dependent, beta 1 subunit [Source:ZFIN;Acc:ZDB-GENE-040718-399]
Coordinates
chr3:16015278-16022079:-
Coord C1 exon
chr3:16022021-16022079
Coord A exon
chr3:16021731-16021840
Coord C2 exon
chr3:16015278-16015429
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGAATTATTGTTTGTTCCAGAAT
3' ss Score
7.93
5' ss Seq
TGGGTACGA
5' ss Score
5.84
Exon sequences
Seq C1 exon
GTCACAGATATGATGCAGAAAGCTCTCTTCGACTTTCTAAAACACAAATTTGAGGGCAG
Seq A exon
AATATCCATCACCCGGGTGACAGCCGACATCTCACTTGCCAAACGCTCCGTCCTTAACAACCCCAGCAAACACACCATCATCGAGCGCTCCAGCACCAGATCCAGCCTGG
Seq C2 exon
CTGAGGTACAGAGTGAAATCGAGAGAATCTTTGAGCTGGCTCGGACGCTTCAGTTAGTGGCTCTGGATGCAGACACAATTAACCATCCATCTCAACTGGCCAAGACCTCACTGGCACCAATCATAGTCTATATCAAGATCGCCTCTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002167-'13-19,'13-15,14-19=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.154 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.3=100)
A:
PF0062516=Guanylate_kin=FE(20.1=100)
C2:
PF0062516=Guanylate_kin=FE(27.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGATATGATGCAGAAAGCT
R:
CTTTGGAGAGGCGATCTTGAT
Band lengths:
211-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]