BtaEX6088280 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000002036 | CACNB1
Description
Bos taurus calcium channel, voltage-dependent, beta 1 subunit (CACNB1), mRNA. [Source:RefSeq mRNA;Acc:NM_175819]
Coordinates
chr19:40305678-40306328:+
Coord C1 exon
chr19:40305678-40305736
Coord A exon
chr19:40305921-40306030
Coord C2 exon
chr19:40306177-40306328
Length
110 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGCTCTGCCCCCCAGGAT
3' ss Score
11.09
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
Exon sequences
Seq C1 exon
GTTACAGATATGATGCAGAAAGCTTTATTTGACTTCTTGAAGCATCGGTTTGATGGCAG
Seq A exon
GATCTCCATCACACGTGTGACAGCGGACATTTCCCTGGCTAAGCGATCAGTCCTCAACAACCCCAGCAAACACATCATCATCGAGCGTTCCAACACACGCTCCAGCCTGG
Seq C2 exon
CTGAGGTTCAGAGCGAGATCGAGCGGATCTTTGAGCTAGCCCGAACCCTTCAGTTGGTTGCTCTGGACGCCGACACCATCAACCATCCAGCCCAGCTCTCCAAGACCTCACTGGCCCCCATCATTGTTTACATCAAGATCACCTCTCCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000002036-'11-16,'11-15,12-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTACAGATATGATGCAGAAAGCT
R:
CTTAGGAGAGGTGATCTTGATGT
Band lengths:
211-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]