RnoEX6033899 @ rn6
Exon Skipping
Gene
ENSRNOG00000054274 | Cacnb3
Description
calcium voltage-gated channel auxiliary subunit beta 3 [Source:RGD Symbol;Acc:2248]
Coordinates
chr7:140321713-140322436:+
Coord C1 exon
chr7:140321713-140321771
Coord A exon
chr7:140321941-140322050
Coord C2 exon
chr7:140322285-140322436
Length
110 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTCCTCACACCCAGGAT
3' ss Score
8.5
5' ss Seq
TTGGTGAGG
5' ss Score
6.9
Exon sequences
Seq C1 exon
GTCACAGACATGATGCAGAAGGCTCTCTTCGACTTCCTTAAACACAGGTTTGATGGCAG
Seq A exon
GATCTCCATCACCCGCGTCACGGCTGACCTCTCACTGGCCAAGCGCTCTGTGCTCAACAATCCTGGCAAGAGGACCATCATCGAGCGCTCTTCTGCCCGCTCCAGCATTG
Seq C2 exon
CTGAGGTGCAGAGTGAGATTGAGCGCATATTCGAGCTGGCCAAATCCCTGCAGCTAGTGGTGTTGGATGCTGACACCATCAACCACCCAGCACAGCTAGCCAAGACCTCACTGGCCCCCATCATCGTCTTCGTCAAAGTGTCCTCGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054274-'18-24,'18-22,19-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.000
Domain overlap (PFAM):
C1:
PF0062516=Guanylate_kin=FE(10.5=100)
A:
PF0062516=Guanylate_kin=FE(20.4=100)
C2:
PF0062516=Guanylate_kin=FE(27.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACAGACATGATGCAGAAGGC
R:
CTTTGGCGAGGACACTTTGAC
Band lengths:
210-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]