MmuINT0028706 @ mm9
Intron Retention
Gene
ENSMUSG00000054083 | Capn12
Description
calpain 12 [Source:MGI Symbol;Acc:MGI:1891369]
Coordinates
chr7:29671717-29672755:+
Coord C1 exon
chr7:29671717-29671791
Coord A exon
chr7:29671792-29672591
Coord C2 exon
chr7:29672592-29672755
Length
800 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TCACGGCTGGTGCTTTCCAGGAT
3' ss Score
7.46
Exon sequences
Seq C1 exon
CTGCCCACGCTGGGACATGCTCCCTTCTGAGTGGCGAGATGCCCTGCTTGTGAAAAAGGAGGATGGCGAGTTCTG
Seq A exon
GTGAGTTCTTAGGGACCCACTCTACCGGTGGGAGGTCCGCTGGGACAGGAGCCTTAGAACGCAGGGCCAGAAAGGACACAGAGAAACTCATGGGATGGATGGGTCATGTTGCAGAGCAATGGTCCCTATCAGCTGTGATGTGGGAATCTAAATCTATTTTTTTGCAAAGTTAGAGCAGAAGCAGTAAGATCAGGACTATAAAGGGCATTGTTTTCAGAGGGAGAACACTGAAATTAGGTTAGCTTAAAACTCACTATATAGACCAGGCTAGTCCTTGTCTCATGGCCATATTTTGACCTCAGCTTTCCAAAAGGCAAGGATGGAATTACAGGCATGAGGGGATCTAAAGGAATGTAGAGTCAGTGATTTTGGGAGATTTAATTGGAATAGAACCATATTTAGGGGGAATCTGGGGAGGCTTTAACTATATATAATTTAAAACTTTTCTATTTCTCCATTGGTGGTGAGAGGATCAGTCCTCTCCTTCCACTGTGAGATGCTAAGGTCAAACTCTCAGCTTGTCAGGCTTGGACAGCAGTGGCTTTTATTGGCTCGGCCATTTTCCCAGACCTATTTGCGGGTTTTCTAATGCTAATTTGAATATGTTGAGAGGCGTTTGTGACTCCTTCCCGAGATAAGGTATTTGTGAGGACTTGGAGACATTGCCAAGGCCTGAAGGCTTCGGGGTTTCTGGAGATTGGAAGTTATTCTGCAGTCTTTAGGGAACTGGGGGCACTTCTGGGGCCCCTCAAGCCGGGCTCTGGAGTGGCTGGGTACTTTTCACGGCTGGTGCTTTCCAG
Seq C2 exon
GATGGAGCTTCAAGACTTTCTCACGCACTTCAACACAGTGCAGATTTGTTCACTGAGTCCTGAGGTGTTGGGCCCCAGCCCTGCTGGCGGCGGCTGGCATATCCACATCTTCCAGGGCCGCTGGGTGCGAGGCTTCAACTCCGGTGGGAGTCAGCCCAGCGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054083-Capn12:NM_001110807:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.017
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(8.4=100)
A:
NA
C2:
PF0064816=Peptidase_C2=PD(6.4=33.9),PF0106717=Calpain_III=PU(13.6=42.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGCTGGGACATGCTCC
R:
CACCGGAGTTGAAGCCTCG
Band lengths:
216-1016
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: