MmuINT0030501 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21799471-21799822:-
Coord C1 exon
chr9:21799652-21799822
Coord A exon
chr9:21799573-21799651
Coord C2 exon
chr9:21799471-21799572
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTAACCCTGCTATCCCCTAGACC
3' ss Score
8.33
Exon sequences
Seq C1 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTGCGACACCAGGTAATACTGCGGCAGAAACGGCTGGAGGACCTGAGGCTGCAGCACAGCCTGCGCCAGCTGGAGATGGCAGAGGTCCAAGACAGCAACATGGAGGCTGCCAAG
Seq A exon
GTGGGGCTACTGAGGTCTGCGGGGGGTCTTGGGGAGGCACGAGGGGTGGCAGGAGGAACTTAACCCTGCTATCCCCTAG
Seq C2 exon
ACCATGCGCAACCTGGAGAATCGGCTGGAGAAGGCCCGGATGAAGGCAGAGGAGGCAGAGCACATCACTAATGTGTACCTGCAGCTCAAGTCTTACCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.281 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF079166=TraG_N=FE(33.7=100)
A:
NA
C2:
PF079166=TraG_N=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCAGGTAATACTGCGGC
R:
TAGTGATGTGCTCTGCCTCCT
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: