HsaINT0029240 @ hg38
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:HGNC:28303]
Coordinates
chr19:11426683-11427040:-
Coord C1 exon
chr19:11426873-11427040
Coord A exon
chr19:11426785-11426872
Coord C2 exon
chr19:11426683-11426784
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
3' ss Seq
CCAGCCCTGCTGCTCTCCAGACC
3' ss Score
5.59
Exon sequences
Seq C1 exon
GCCCTGGAGCACCTAGACCACCGGCTGAGGGAGAAGGTGAAGCAGCAGAACGCCCTGCGGCACCAGGTGGTGTTGCGGCAGAGGCGGCTGGAGGAGCTCCAGCTGCAGCACAGCCTGCGCCTTCTGGAGATGGCGGAGGCGCAAAACAGACACACGGAGGTGGCCAAG
Seq A exon
GTAGGGGCGGGTGAGGCCTGCAGGGCAGAGGGTCGTGTGGGAGGGATTGAGTGCGGAGGGCCCTCAGCCCAGCCCTGCTGCTCTCCAG
Seq C2 exon
ACCATGCGGAACCTGGAGAACCGCCTGGAGAAGGCCCAGATGAAGGCGCAGGAGGCCGAGCACATTACCAGCGTGTACCTGCAGCTCAAGGCCTATCTAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003:ENST00000356392:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.320 A=NA C2=0.441
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGGTGAAGCAGCAGAACG
R:
CCTTCATCTGGGCCTTCTCCA
Band lengths:
183-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development