RnoINT0030554 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23006421-23006774:-
Coord C1 exon
chr8:23006604-23006774
Coord A exon
chr8:23006523-23006603
Coord C2 exon
chr8:23006421-23006522
Length
81 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
CTAGCCCTGCCGTCCCCTAGACC
3' ss Score
7.51
Exon sequences
Seq C1 exon
CAGGCCCTGGAGCACCTGGAGCACCAGTTGAGGGAGAAGATGAACCAGCTGAATGCCTTACGACACCAGGTAATCCTTCGGCAGAAACGGCTGGAGGAACTGAGGCTGCAGCACAGCCTGCGGCAGCTGGAGATGGCAGAGATCCAAGACAGCAACACAGAGGCCGCCAAG
Seq A exon
GTGGGGCCTGCTGAGGGCTGCAGGGTCCTGGGGGAGGCATGGTGGGTGGAAGGAACTTGGCCTAGCCCTGCCGTCCCCTAG
Seq C2 exon
ACCATGCGCAACCTGGAGAACCGGCTGGAGAAGGCCCGGATGAAAGCAGAGGAGGCAGAGCACATCACCAATGTGTACCTGCAGCTCAAGTCTTACCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.316 A=NA C2=0.471
Domain overlap (PFAM):
C1:
PF079166=TraG_N=FE(33.3=100)
A:
NA
C2:
PF079166=TraG_N=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATCCTTCGGCAGAAACGGC
R:
CATTGGTGATGTGCTCTGCCT
Band lengths:
174-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]