MmuINT0030502 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21799257-21799572:-
Coord C1 exon
chr9:21799471-21799572
Coord A exon
chr9:21799383-21799470
Coord C2 exon
chr9:21799257-21799382
Length
88 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
TGCCTCTCTCCACATGCCAGGAG
3' ss Score
5.42
Exon sequences
Seq C1 exon
ACCATGCGCAACCTGGAGAATCGGCTGGAGAAGGCCCGGATGAAGGCAGAGGAGGCAGAGCACATCACTAATGTGTACCTGCAGCTCAAGTCTTACCTCCAG
Seq A exon
GTGGGAACACTTTGTAGAGAGAGGTAGGTGACGGGGTGGACCTGACCAGGGACAGCAGTCACAAGCCTTGCCTCTCTCCACATGCCAG
Seq C2 exon
GAGGAGAGTCTCAACTTGGAGAGCCGGCTAGATTCCATGGAGGCTGAGGTGATGAACACCAAACATGAGGTTCAAGAGCTGAAAGTAGTGAATCAAGAGGCTATAAATGCCCGGGACATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF079166=TraG_N=FE(19.9=100)
A:
NA
C2:
PF079166=TraG_N=PD(7.8=31.0),PF0093016=DPPIV_N=PU(14.4=38.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGCAGAGCACATCACTA
R:
TCCCGGGCATTTATAGCCTCT
Band lengths:
169-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: