HsaINT0029241 @ hg19
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:28303]
Coordinates
chr19:11537266-11537604:-
Coord C1 exon
chr19:11537503-11537604
Coord A exon
chr19:11537392-11537502
Coord C2 exon
chr19:11537266-11537391
Length
111 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
3' ss Seq
CCCTCCCCACCACGCCCCAGGAC
3' ss Score
5.13
Exon sequences
Seq C1 exon
ACCATGCGGAACCTGGAGAACCGCCTGGAGAAGGCCCAGATGAAGGCGCAGGAGGCCGAGCACATTACCAGCGTGTACCTGCAGCTCAAGGCCTATCTAATG
Seq A exon
GTAGGGACTAGGAGGGCTCGGGTGAGATGACAAACAGGGAGGGCGGGCTTGGCTAGGGACAGCAGTCACAGACCTGCACCATCTCCGCTACCCCTCCCCACCACGCCCCAG
Seq C2 exon
GACGAGAGCCTCAACTTGGAGAACCGGCTGGACTCCATGGAGGCTGAGGTGGTGAGGACCAAACATGAGCTGGAGGCACTGCACGTGGTGAACCAAGAGGCCCTCAATGCCCGGGACATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-CCDC151:NM_145045:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=0.119
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGCGGAACCTGGAGAACC
R:
CTTGGCAATGTCCCGGGC
Band lengths:
226-337
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)