RnoINT0030555 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23006209-23006522:-
Coord C1 exon
chr8:23006421-23006522
Coord A exon
chr8:23006335-23006420
Coord C2 exon
chr8:23006209-23006334
Length
86 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
TCCCTCTCTCCATATGCCAGGAG
3' ss Score
6.3
Exon sequences
Seq C1 exon
ACCATGCGCAACCTGGAGAACCGGCTGGAGAAGGCCCGGATGAAAGCAGAGGAGGCAGAGCACATCACCAATGTGTACCTGCAGCTCAAGTCTTACCTTCAG
Seq A exon
GTAGGAACACTGGAGAGAGAGGGAGGGGAAGAAGATGGACCTGACCAGGGACAGCAGTCACAGCCTTCCCTCTCTCCATATGCCAG
Seq C2 exon
GAGGAGAGTCTCAACTTGGAGAACCGGCTGGATTCCATGGAAGCTGAGGTGATGAACACCAAACATGAAGTGCAGGAGCTGAAAGTGGTGAACCAAGAGGCTATAAATGCCCGGGACATTGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.452
Domain overlap (PFAM):
C1:
PF079166=TraG_N=FE(19.6=100)
A:
NA
C2:
PF079166=TraG_N=PD(7.7=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAGCACATCACCAATG
R:
TGTCCCGGGCATTTATAGCCT
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]