MmuINT0030505 @ mm9
Intron Retention
Gene
ENSMUSG00000039632 | Ccdc151
Description
coiled-coil domain containing 151 [Source:MGI Symbol;Acc:MGI:1924859]
Coordinates
chr9:21796052-21796452:-
Coord C1 exon
chr9:21796292-21796452
Coord A exon
chr9:21796209-21796291
Coord C2 exon
chr9:21796052-21796208
Length
83 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AACCTCCTGGCTCCCGGCAGCCA
3' ss Score
5.94
Exon sequences
Seq C1 exon
GCGGTAGTGCGCAGGTTCCTGGCCCAGGATGAGACCTTCACACAGTTGGAGAATCTCAAGAAGGACAATGAACTGGCGTTGGCGAAGTTGAAGGAGGAGAAGCAGCGGCTCCAGAGGGAGCTGGAGAACCTCAAGTACTCGGGGGATGCTACGCTGGTGAG
Seq A exon
GTGAGGCTTCGGTGGCTGAGGGGAGGCTACGGGGACGCTGGAGTCAGCCATTGGCAGCTGCTGAACCTCCTGGCTCCCGGCAG
Seq C2 exon
CCAGCGGAGGCTCCACGAAGAGATGCAAAAGACATTCAAGAAGGAGGAGCAGCGTCACAATGATGTCCACGAGAGACTGGAGCACACCTCGCGAATCCTCCAGTTGGTCAAAGATTGCTTGGAGCATTTGGCCAACAAACTGAGTCACGTAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039632-Ccdc151:NM_029939:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.321
Domain overlap (PFAM):
C1:
PF0093016=DPPIV_N=PD(0.1=0.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAAGTACTCGGGGGATG
R:
CGTGACTCAGTTTGTTGGCCA
Band lengths:
183-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: