HsaINT0029245 @ hg19
Intron Retention
Gene
ENSG00000198003 | CCDC151
Description
coiled-coil domain containing 151 [Source:HGNC Symbol;Acc:28303]
Coordinates
chr19:11533139-11533529:-
Coord C1 exon
chr19:11533369-11533529
Coord A exon
chr19:11533296-11533368
Coord C2 exon
chr19:11533139-11533295
Length
73 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GACCTCCCGGCTCCCTGCAGCCA
3' ss Score
7.64
Exon sequences
Seq C1 exon
TCGTTGGTGCGGCGGTTCCTGGCCCAGGGCGACACCTTCGCGCAGTTGGAGACGCTCAAGAGCGAGAACGAGCAGACGTTGGTGAGGCTGAAGCAGGAGAAGCAACAACTGCAGCGGGAGCTGGAAGACCTCAAGTACTCGGGGGAGGCCACGCTGGTGAG
Seq A exon
GTGAGGCACCGGGGCTCTGGGGAGGGCGGCGGGGCGGGCTGAGCCCCCGGGGTGACCTCCCGGCTCCCTGCAG
Seq C2 exon
CCAGCAGAAACTGCAAGCCGAGGCGCAGGAGCGTCTCAAGAAGGAGGAGCGGCGGCACGCCGAGGCCAAGGACCAGCTGGAGCGCGCCTTGCGGGCGATGCAAGTGGCCAAGGACAGCCTGGAGCACCTGGCCAGCAAGCTGATCCACATCACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198003-CCDC151:NM_145045:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=NA C2=0.340
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGTTGGAGACGCTCAAGAG
R:
TCCTCCTTCTTGAGACGCTCC
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)