RnoINT0030559 @ rn6
Intron Retention
Gene
ENSRNOG00000013263 | Ccdc151
Description
coiled-coil domain containing 151 [Source:RGD Symbol;Acc:1310048]
Coordinates
chr8:23002669-23003068:-
Coord C1 exon
chr8:23002908-23003068
Coord A exon
chr8:23002826-23002907
Coord C2 exon
chr8:23002669-23002825
Length
82 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
AACCTCCCGGCTCCTGGCAGCCA
3' ss Score
4.86
Exon sequences
Seq C1 exon
GCGGTGGTGCGAAGATTCCTGGCCCAGGACGAGACCTTTACGCAGCTGGAGACCCTCAAGAGAGACAATGAACTGGCGTTGGCAAAGTTGAAGGAGGAGAAGCAGCGGCTCCAGAGGGAGCTGGAGAACCTCAAGTACTCAGGGGATGCCACACTGGTGAG
Seq A exon
GTGAGGCCTCGGTGGCTGAGGGAGGCTGCGGGGACGCTGGAGTCAGCCATTGGCAGCTGCTGAACCTCCCGGCTCCTGGCAG
Seq C2 exon
CCAGCGGAAGCTCCACGAAGAGATGAAAAAGGCATTCAAGAAGGAGGAGCAGCGTCACAGCGAAGTCCTGGAGCGACTGGACCGCACCTCGAGAGTCCTCGAGTTGGTCAAAGATTGCCTGGAGCATTTGGCCAACAAACTGAGTCACGTGCAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013263:ENSRNOT00000017820:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.094
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGGAGCTGGAGAACCTCAA
R:
GCTCCAGGCAATCTTTGACCA
Band lengths:
173-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]