GgaINT1016105 @ galGal4
Intron Retention
Gene
ENSGALG00000026986 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr26:1134279-1134645:+
Coord C1 exon
chr26:1134279-1134456
Coord A exon
chr26:1134457-1134548
Coord C2 exon
chr26:1134549-1134645
Length
92 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TCACCTGAGTGCCACCGCAGGCG
3' ss Score
1.54
Exon sequences
Seq C1 exon
GGCAGGAAGGCGGCCTCATGCACGGACAACGTGACGGACGCGCGGCTCCCCGACGAGGGCGGCTCCGGGCGGGTGGTGACGTCCCACGTGTGCCAGGCCATCGTGGTGCCCTCGGACGTGGTGGGCCACCGTGCCGCCGTGTCCTCGCAGCCCGTCAGCCTGGCGGACCGCCTCCTGG
Seq A exon
GTGAGCCCCAAACCCCTCCGTGCCCCGATGCCCCCCCGTCGTGGCGCGCCGCGGCTGCCGAGTCCCCCCGTGTCACCTGAGTGCCACCGCAG
Seq C2 exon
GCGTCACCGTGAGCTCCGCGCTGGACGGCGTCGCCGCGCCCCCTGAGCTGTTCCCCCCCGCCAGCCCCGAGCTGCCCGACGTCGTCTTCTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026986:ENSGALT00000043678:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.183 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCGTGGTGCCCTCGGA
R:
GAAGAAGAAGACGACGTCGGG
Band lengths:
175-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]