HsaINT0086685 @ hg38
Intron Retention
Gene
ENSG00000116299 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr1:109197474-109198075:+
Coord C1 exon
chr1:109197474-109197654
Coord A exon
chr1:109197655-109197978
Coord C2 exon
chr1:109197979-109198075
Length
324 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TAGGAGCTCTAATTTGGCAGGGG
3' ss Score
0.71
Exon sequences
Seq C1 exon
GGTAGGAAAATGTCTGTGTGCACCGACAATGTCACTGACCTCCGGATTCCTGAGGGTGAGTCAGGGTTCTCCAAATCTATCACAGCCTACGTCTGCCAGGCAGTCATCATCCCCCCAGAGGTGACAGGCTACAAGGCCGGGGTTTCCTCACAGCCTGTCAGCCTTGCTGATCGACTTATTG
Seq A exon
GTGAGTAACTCCGCTGCCTCAGCCTTGTTTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTATGTGTAAGAGAGTGTGAGGTTACCAGTCTGGGAGGTAAAAGGCCCCACATGAGGGGCCCAACCTCTTGACCTGTGTTTTCTATTCCACTCTGTGTGCAAAGTGCTCCCAGGGACTCTGACAAACCCTTGTTTCACCCTTTCATAAGCCACTCAGGGATGTGATGAGATGAAGTGAGGTTGGATGTTGACAGGTATTGGAAGAATTGAAGTGGTTGCCAGCTAATGCTACTAGTGAGAACTAATTAGGAGCTCTAATTTGGCAG
Seq C2 exon
GGGTGACAACAGATATGACTCTGGATGGAATCACCTCCCCAGCTGAACTTTTCCACCTGGAGTCCTTGGGAATACCGGACGTGATCTTCTTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000116299:ENST00000369936:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTAGGAAAATGTCTGTGTGCAC
R:
CTATAAAAGAAGATCACGTCCGGT
Band lengths:
278-602
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development