BtaINT0081093 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001136 | KIAA1324
Description
KIAA1324 [Source:HGNC Symbol;Acc:HGNC:29618]
Coordinates
chr3:34321629-34322216:-
Coord C1 exon
chr3:34322036-34322216
Coord A exon
chr3:34321726-34322035
Coord C2 exon
chr3:34321629-34321725
Length
310 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGT
5' ss Score
11.11
3' ss Seq
TAGGAGCTCTCATTTGGCAGGCG
3' ss Score
2.74
Exon sequences
Seq C1 exon
GGTAGGAAAATGTCCGTGTGCACTGACAATGTCACCGACCTCCGGATCCCCGAGGGTGAGTCAGGTTTCTCCAAACCCATCACAGCCTACGTGTGCCAGGCGATCATCATTCCCCCAGAGGTGACAGGCTACAAGGCCGGGGTGTCCTCGCAGCCTGTCAGCCTCGCAGACCGGCTTATCG
Seq A exon
GTGAGTACCTCCGTCTTTCTCACCTGTTTGAGTGTGTGTCTGTGTGAAGAGAGAGTGAGTGAGGCTCCCAGACTCTAAGCTAAAAGGCCCCAGGTGAGGGGCCCAACCTCCTGACCTCTGTTTCCGACTCCATCCTGGGGTACCAAGGGCCCCTGGGGCCACTGATAAACCTTTGGTTTGCCCTCTCCTGAGCCACTCAGGGATGTGATGAGATGAAGGAAGGTGGGATGCGAACAGGTATTGGAAGAACTGAAGTGGTTGCCAGCTAAATGCTACTAGTGAGAACTAATTAGGAGCTCTCATTTGGCAG
Seq C2 exon
GCGTGACAACAGATATGACTCTGGATGGCATCACCTCCCCGGCTGAACTTTTCCACCCGGAGTCCCTGGGAATACCGGACGTGATCTTCTTTTATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001136:ENSBTAT00000001511:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAATGTCCGTGTGCACTG
R:
AAAAGAAGATCACGTCCGGTA
Band lengths:
270-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]