GgaINT0113149 @ galGal3
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
NA
Coordinates
chr1:8107555-8114739:+
Coord C1 exon
chr1:8107555-8107744
Coord A exon
chr1:8107745-8114642
Coord C2 exon
chr1:8114643-8114739
Length
6898 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TTCGTTTTCCTAAATTTTAGGAG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCAGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
Seq A exon
GTACGTGGTTTGTGTTATGCATACTGCTGCAAGTGAGTTATCTTGGGGCTGGTCAGCTCTTGTCTGTATTAGTATTTCTTCCCTGTGTTTGGTCTTGTGGGTCCCATGGCGCATAAAATTTCAGCATAAAAATCTGGAGAATGTAATTCAAAGGATTTCATTTGCTGTCATGTTTCCTGCCCACCTCACATAGAGCAACACCAGTCACTGTAGCAGTCCCATTAGTCCAAGCATTCCTGCCCATGCCAAGTCCCAGCTCAGGCAATTTCAGAAGGTGGTGGTGCTGGGGCATAATTAGGTGAGGGCAGCATGAGGCAATGCACACCATTATGTCTTGCATTGCTTCAGCTCACAAGTTCGCAGAGTCTAAGGCCAGAGCAGACAATGAAGTCATCTAGTCTGCTCACCTATCCATTACCGGCACAGAATGTTTGTACTTGCTCCCTGGCATTGAGCCCAGAAACTTGTTTTTGACAAAAGCACATCTTTGCAAGAGCATTCCAAACTTGAACTTCTAAGACTAATGGAAATAAAAGCTTTTCCACAGTTGCTGTTATTATACATTTCACTGGATAAACACCATCTCCGTATTTTGTATTAAAGCAGCTTTTTTTCCCATTTAAATGTGCCTGGCTTCGATTTTCAGCACTTATTTCCTGTTATTTTTTTTTTTTTCTCCATTTCACAGCTACTTTTTCCTGCCCGGATAATTTTTTTGTACACTGGGATCATCGCATCTCCACATCACACCCTGCTCATCTGCTCTTCTGATAAACTAAGCAAACCGAATTCTTCAAAGTCTCTTGCTAACATGTATTTCTCTCAAGCATCCAAATACCTTTTGAGGCTCTTTCTGTGACCTCTTGTTATTATCTTTTCTTGAAGTTTGGGCATCAGCCTAGAATACTACTACAACATTTAATTCACTATAAAGACAATGAGAATCACTTTCATGTTTGTATTTACATGCAACAGCTGAATCTTTGAGTCCTTCCAAACTCATAGGATTTCATTATGTCCTCTTGGTTCTATTATCCAGAACAAAGATCTTTTTCAGAGTTACAATTTCCAAGGGACAATCTCTCTTCTTTAGGACTGGCCTTCATCTCCTGCAGCGCATTGCTGCACTAAAATAGGTTATGTTTCAGTGGGACCAGCTTACCAAGTGAATGAAGTTACCCTGTTTTGTATTTCTATTCTTGATCTTTGTCTCATCTGCACTTCACCAATAGTGATTACATTGTTACTTGCAGATCAGTGATGAAAATCTTGCATTTTGGGACATTTTGGGTCAGTGCCTAGAGAAACCTGGGGCCATACCCCTTTTGATGACAATTTGCCATGGACAGATAATTTTGTAATTGATTAGTTAAATAACTTTTAATTCAGAGTATACCCTTAATTGATAGAACACTGCCAACTCTTTAATTAAAATCTCATATTAATTAGTGAAATACTTGATAAATGTACATAATTTTCTTTAGCAACCAAATTCATCAGCACTCAAGGAATGAAATCAGATTTATTGAACAGAAGCTGTTCTGCACAAGTTCATGTTGTCTGCTTTTTTATATGTATCTATGCATTAACTGAACCTCGTCTTCCACTTCCCATTCCTTTTAATCTGCCACGTTGTGTTAGCCACATTTTCATCTGCAGTTCAGTTTTGTCCTTTCTGAATTTCTACACTGTATTCCCTCTCCATCAGTCTTCTGACATTTCACTATCGTTAAATGTTCTATTAAAGACAGATATTTCTAAGTGGAAAATCCTGTTGCCCTGGTTACTCTAATATACAGCTTTTCTAATTTATGTGTGCATCCCAGGTAGTTGCCAAAATCCTCTCTTGCTAGTGAAAAAATAAGGTGTACAAGCATTATCTTGGAAAGGACACAGGTAATCCTGATTTTCTCTTCGTACAGAGAAAACGTATCAAGATCTTCTGCATTTTCTGTACTACAACTTTTACATTTTAAAATGCTGAAAGTTTGCCTTTGACATCCATAAGGTATATCTTATTGCTAGTATTTTTTAACAGGCCTCAGACTTAGGATTTTTCTGGTGCTGCCAAACATGAGCTTTTCCCTGAAGTCTTTAGCATCCATTATGACTTTTTTGTAACTGAAACTTTGATTTAAGTAGATTGCTATTTGATTCTCTATTCCCTCTCTAGGAAACTTCTGCCAATGTTTTTGGGTTTGTTTTTTTTAAAGTCTCCTTTCCTGCTACTCTATTCCAAAGTGGACTCTTAGTCAAAACAGTTGTTATTCAAGAGAGAGCTATTGTGGCTTTTTAGCTATCTAATTAATATCTTCTGAGAAATACCATCTTTTTTCCTCACACTTGATTTTGCTTCTAGTGTTATTATTTTTAGAAATGGCACTTAGGGATGCCAGCTTTACAGTACTGCATATGGGATAGGAATACTCTCTCATTGCATCTTGAATATATTAAAGTCCCTAGGAGCTACATCTTCCAGTCTACTGAGTAATGAATGTTTGGTTGAGATCCAAATTTAAGAAGCCCTGTGTTAGACACAATATCTTTGATTAGAGGCAATAATTATTAAAGGGACTCTAGTGTGTGTTCTCAGAATGGAGACTCCTCCACAACAATGACGTCTCTCTGCATGTGTTCCCTATGGCTGCCGCAACAAGGTTCATTGCTTTTTCTTTGTGTTGATGTGATGCTCTGTAGCCATTCCTCACCTGCACGACTAGGCAGTGTTACTGTGCACACTGATCCATGTACTTACATGATCACAGGCTTGGACAGACTAAAGAATGCAGCCAGGGTGTCTGAATTCTTGGAAGAACAAGGGGAAAACTTTTGTCTTCAGTCTTCCTATCAGTTGCTGGTTGCTAACACTTTGCTTTTTACAGTTCTAGCAATTTTTCACCTCACTAGAAGGATGCAACCTGCCCCATTTGTACAGCTCCCACTTCTGAAATGTTGTGGTGCAGGATCAGTGTTTTCCATCTTCTCTGCTTCATGGGATAAAAAGGATCTCAAAATTTGTGTTACTTGAGTTTTCCTCTCTTTCAGGTCTCCAAAGTCTGTGCAGACCTGTGTAACCTTTGTTATTCCACACATCCACTTGTTTGTTCTAAAATGTGCCGTCAGGGCTTTCCTATGAATCCATAATCCTTCTGAATCTTTTCATTGAAGGTTCCTTCCTGCAATACTACAGATTGCTCAGGATGTTGTGATAATGTTGTGTTAGAGTTATACACAAAAGCATCACATGCAAGGCATATGGTTTGAGCAGTTGATAGTACCAGATGATTTCCAGAAGCCCTTTGCCAAACTGAGTTATTTTATTATTCTGTGATATCTCCTGATAGATGTAAATTCAGACAAAGAGAGTATAATCCATGTACACTGTTTTTATTATTATTAATATTTTCTGTATGACAAAATCAGACTGCATGAGGAACATACAAATCTGCAGTCTCAGTTAGAATAAAGGAAAATGAATAATATATAACAATGCCATTAAATGCTATTAAGTGAGAACCATACCTTGCGGACAGAAAATATTGCATGCGAACCCCTCAGAAATCCATTCCTATCTCGTTCCTTTCATTTTCGTTTTCCTAAATTTTAGGAGCTACTGTTGAAACAATGCTGGAAAATATCAGTGTCAAGACAGACATGTTCCCTCCCTCTCCAAGCAAAATACCTGATGTGCATTTCTTTTACAAGTAGGTAAAAAAATCCTGCTAATTGGTACCTCAACTTTCATTTGTTTAAAGGAAACTAAAGCTGTGAGGGAAGATCTTTTATGCACCTTTAATCTTTATTGCTTTAGTCAATATTTGGCTGATATTAGTTGACGTGTTGAAGAATATTTTATGAAATCAGCCAACACTGTTTGCTCAAGTCTAAATTATAGTCAGTGGGTAGATAGTGATACCAGAACTTTGATTAATCCAAGTGCCACTTCCACTGTCAAGTTACTTTCCTTAATTTCCTGTGTTTGACTTTGATACTTTACGGTTTCATTGTATATTTCCTTCACAGTTATTTGTGTTTTTTGATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCCAGTAATTAACTGTGACAGAACAGGTCCTTTCCATATGGACGACATCACCCAGGCATCATTTTAACAAGAACAGGAACCAACTTGTGGCATTCATGGGAAACAGTCACCCAGTTCAGGAGAATAGTGAGAGAGGCACACGCCAGTGTAGCTTGTGCTGGTGAAACGTTAGAGTAGTTCTGCTGCCCCAGGGCTTACTTCTTTTCTTCATTGTAAGTGCATAGGTAGCACACACTGCCAGGAACTGAGCTGTTTTTTTAGACCTTTGGCAGCCCAATATCTGTTGTTTTTTGGAAGAGTATTATTTAAACTGGGAAAAATTCTTCCCCCAGATTTCTCCACCTGCTGACTTGATAGATGTTTACCTGTTTGTTGTACTTACTGTTACCAATCTCAGCCACAGAATGTAGAGAGAAGATGCAAACTCCAGAGTGTTTCATAAATGATAACTATGCTTTGGTCTCCTCCTAGCTCATGCCCTGCTGGCACCTGCGATGGGTGCACTTTCTACTTTGTGTGGGAAAGTGCAGAAGCTTGCCCTTTGTGCACAGAGCAAGACTACCATGAGATCGAGGGAGCCTGCAAAAAAGGATTTCAGGTACACCACCCCCAGCTCCAAGTTGTGTGTGTTAATTTGGGTAAATCTTGAAAGCTGTTGAAATTCTTTGTGCAAGTGGACATGTTAAGTGCAGGTAGAATTGGGTATCTCTGGCTGTGTTGAGACTCGGGAATATTTGTGCCCATGGCAGCTCTCCTCTAGCTTGTGTCTGTATGGGTAAAACCTAAACTCTAGATACATTCCTACATGCAAGCAAGCTGTTTGTAGAATGGAATGCCTAAAGGACATCAGTCCTTAGGTAGCCATAATCATCATGGCAGACTAGACAGATTTCAGTTTAGAAATTCATCTTTCCTTGTTTGCAGTGTTTTTGCTACTGCCTCTGCTAATAAAATATTAGGAAATCCTTTCACTGGTTCAGAACTGCCCTGTTGATAAACATCTCCAAAGCAGGCACAGCCAATTCACAATCCCTGTCCAAACTAAAGCATATCAAGTGGGGATCATTAAAGAAGTGGAAACCCTTCCGCCATGTTTGAATCTACAGCTACAATCAAGGGGACAATTGAGTTGACAATATGACTGAAAACCAAGCTCGTGCTTTGGTTTTCTTTTTGGTTTTCTTCTTTCTTTGAAAAGATGTCTAGCCCACTTACCAAAAAACAGCTTGTTTATTTCAACTTTAAATAGTTCTCTCTTTTCCTACAAACAGCTCATTTTCTGGTGTTCTATGATTTCTATTTGAAAGGAAACCTTGTATGTATGGAATGAGCCAAAGCATTGCATTAAAGGGGTTCCCTTGCCAGAGAAAAGGACCAGCACTTGTGAAACGGTGGATTTTTGGCTAAAGGTTGGAGCTGGGGTGGGTGCCTTCGTTGCTGTTNNNNNNNNNNGAAATACCATCTTTTTTCCTCACACTTGATTTTGCTTCTAGTGTTATTATTTTTAGAAATGGCACTTAGGGATGCCAGCTTTACAGTACTGCATATGGGATAGGAATACTCTCTCATTGCATCTTGAATATATTAAAGTCCCTAGGAGCTACATCTTCCAGTCTACTGAGTAATGAATGTTTGGTTGAGATCCAAATTTAAGAAGCCCTGTGTTAGACATGATATCTTTGATTAGAGGCAATAATTATTAAAGGGACTCTAGTGTGTGTTCTCAGAATGGAGACTCCTCCACAACAATGACGTCTCTCTGCATGTGTTCCCTATGGCTGCCGCAACAAGGTTCATTGCTTTTTCTTTGTGTTGATGTGATGCTCTGTAGCCATTCCTCACCTGCATGACTAGGCAGTGTTACTGAGCACACTGATCCATGTACTTATATGATCACAGGCTTGGACAGACTAAAGAATGCAGCCAGGGTGTCTGAATTCTTGGAAGAACAAGGGGAAAACTTTTGTCTTCAGTCTTCCTATCAGTTGCTGGTTGCTAACACTTTGCTTTTTACAGTTCTAGCAATTTTTCACCTCACTAGAAGGATGCAACCTGCCCCATTTGTACAGCTCACACTTCTGAACTGTTGTGGTGCAGGATCAATGTTTTCCATCTTCTCTGCTTCATGGGATAAAAAGGATCTCAAAATTTGTGTTACTTGAGTTTTCCTCTCTTTCAGGTCTCCAAAGTCTGTGCAGACCTGTGTAACCTTTGTTATTCCACACATCCACTTGTTTGTTCTAAAATGTGCCGTCAGAGCTTTCCTATGAATCCATAATCCTTCTGAATCTTTTCATTGAAGGTTTCTTCCTGCAATACTACAGATTGCTCAGGATGTTGTGATTATGTTGTGTTAGAGTTATACACAAAAGCATCACATGCAAGGCATATGGTTTGAGCAGTTGATAGTACCAGATGATTTCCAGAAGCCCTTTGCCAAACTGAGTTATTTTATTATTCTGTGATATCTCCTGATAGATGTAAATTCAGACAAAGAGAGTATAATCCATGTACACTGTTTTTATTATTATTAATATTTTCTGTATGACAAAATCAGACTGCATGAGGAACATACAAATCTGCAGTCTCAGTTAGAATAAAGGAAAATGAATAATATATAACAATGCCATTAAATGCTATTAAGTGAGAACCATACCTTGCGGACAGAAAATATTGCATGCGAACCCCTCAGAAATCCATCCCTATCTTGTTCCTTTCATTTTCGTTTTCCTAAATTTTAG
Seq C2 exon
GAGCTACTGTTGAAACAATGCTGGAAAATATCAGTGTCAAGACAGACATGTTCCCTCCCTCTCCAAGCAAAATACCTGATGTGCATTTCTTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]