GgaINT0113149 @ galGal4
Intron Retention
Gene
ENSGALG00000006606 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr1:7503074-7506966:+
Coord C1 exon
chr1:7503074-7503263
Coord A exon
chr1:7503264-7506869
Coord C2 exon
chr1:7506870-7506966
Length
3606 bp
Sequences
Splice sites
5' ss Seq
TAGGTACGT
5' ss Score
8.17
3' ss Seq
TTCGTTTTCCTAAATTTTAGGAG
3' ss Score
8.87
Exon sequences
Seq C1 exon
GGTAAAAAGATGGCTATTTGCACTGACAATATCACAGATGTTACCCTGAAGGACATGGTTGCAGAATCAGAAGATTTTTCCAACTTTGTGGGAGCTTTTGTCTGTCAGTCCACCATCATCCCATCGGACAGCAAGGGCTTCCGAACAGCCCTGGCTCTTCAGTCCAATAGCCTTGCTGACAGGTTCTTAG
Seq A exon
GTACGTGGTTTGTGTTATGCATACTGCTGCAAGTGAGTTATCTTGGGGCTGGTCAGCTCTTGTCTGTATTAGTATTTCTTCCCTGTGTTTGGTCTTGTGGGTCCCATGGCGCATAAAATTTCAGCATAAAAATCTGGAGAATGTAATTCAAAGGATTTCATTTGCTGTCATGTTTCCCGCCCACCTCATGTAGAGCAACACCAGTCACTGTAGCAGTCCCATTAGTCCAAGCATTCCTGCCCATGCCAAGTCCCAGCTCAGGCAATTTCAGAAGGTGGAGGTGCTGGGGCATAATTAGGTGAGGGCAGCATGAGGCAATGCACACCATTATGCCTTGCATTGCTCCAGCTCATAAGTTCTCAGAGTCTAAGGCCAGAGCAGACAATGAAGTCATCTAGTCTGCTCACCTATCCATTACCAGCACAGAATGTTTGTACTTGCTCCCTGGCATTGAGCCCAGAAACTTGTTTTTGACAAAAGCACATCTTTGCAAGAGCATTCCAAACTTGAACTTCTAAGACTAATGGAAATAAAAGCTTTTCCACAGTTGCTGTTATTATACATTTCACTGGATAAACACCATCTCCGTATTTTGTATTAAAGCAGCTTTTTTTCCCATTTAAATTTGCCTGGCTTCGATTTTCAGCACTTATTTCCTGTTATTTTTTTTTTTTCTCCATTTCACAGCTACTTTTTCCTGCCTGGATAATTTTTTTGTACACTGGGGTCATCACATCTCCACATCACACCCTGCTCATCTGCTCTTCTGATAAACTAAGCAAACCGAATTCTTCAAAGTCTCTTGCTAACGTGTATTTCTCTCAAGCATCCAAATACCTTTTGAGGCTCTTTCTGTGGCCTCTTGTTATTATCTTTTCTTGAAGTTTGGGCATCAGCCTAGAATACTACTACAACATTTAATTCACTATAAAGACAATGAGAATCACTTTCATGTTTGTATTTACATGCAACAGTTGAATCTTTGAGTCCTTCCGAACTCATAGGATTTCATGATGTCCTCTTGGTTCTATTATCCAGAACAAAGATCTTTTTCAGAGTTACAATTTCCAAGGGACATTCTCTCTTCTTTAGGACTGGCCTTCATCTCCTGCAGCGCATTGCTGCACTGAAATAGGTTATGTTTCAGTGGGACCAGCTTACCAAGTGAATGAAGTTACCCTGTTTTGTATTTCTATTCTTGATCTTTGTCTCATCTGCACTTCACCAATAGTGATTACATTGTTACTTGCAGATCAATGATGAAAATCTTGCATTTTGGGACATTTTGGGTCAGTGCCTAGAGAAACCTGGGGCCATACCCCTTTTGATGACAATTTGCCATGGACAGATAATTTTGTAATTGATTAGTTAAATAACTTTTAATTCAGAGTATACCCTTAATTGATAGAACACTGCCAACTCTTTAATTAAAATCTCATATTAATTAGTGAAATACTTGATAAATGTACATAATTTTCTTTAGCAACCAAATTCATCAGCACTCAAGGAATGAAATCAGATTTATTGAACAGAAGCTGTTCTGCACGAGTTCATGTTGTCTGCTTTTTTATATGTATCTATGCATTAACTGAACCTCGTCTTCCACTTCCCATTCCTTTTAATCTGCCACGTTGTGTTAGCCACATTTTCATCTGCAGTTCAGTTTTGTCCTTTCTGAATTTCTACACTGTATTCCCTCTCCATCAGTCTTCTGACATTTCACTATCGTTAAATGTTCTATTAAAGACAGATATTTCTAAGTGGAAAATCCTGTTGCCCTGGTTACTCTAATATACAGCTTTTCTAATTTATGTGTGCATCCCAGGTAGTTGCCAAAATCCTCTCTTGCTAGTGAAAAAATAAGGTGTACAAGCATTATCTTGGAAAGGACACAGGTAATCCTGATTTTCTCTTCGTACAGAGAAAACGTATCAAGATCTTCTGCATTTTCTGTACTACAACTTTTACATTTTAAAATGCTGAAAGTTTGCCTTTGACATCCATAAGGTATATCTTATTGCTAGTATTTTTTAACAGGCCTCAGACTTAGGATTTTTCTGGTGCTGCCAAACATGAGCTTTTCCCTGAAGTCTTTAGCATCCATTATGACTTTTTTGTAACTGAAACTTTGATTTAAGTAGATTGCTATTTGATTCTCTATTCCCTCTCTAGGAAACTTCTGCCAATGTTTTTGGGTTTGTTTTTTTTAAAGTCTCCTTTCCTGCTACTCTATTCCAAAGTGGACTCTTAGTCAAAACAGTTGTTATTCAAGAGAGAGCTATTGTGGCTTTTTAGCTATCTAATTAATATCTTCTGAGAAATACCATCTTTTTTCCTCACACTTGATTTTGCTTCTAGTGTTATTATTTTTAGAAATGGCACTTAGGGATGCCAGCTTTACAGTACTGCATATGGGATAGGAATACTCTCTCATTGCATCTTGAATATATTAAAGTCCCTAGGAGCTACATCTTCCAGTCTACTGAGTAATGAATGTTTGGTTGAGATCCAAATTTAAGAAGCCCTGTGTTAGACATGATATCTTTGATTAGAGGCAATAATTATTAAAGGGACTCTAGTGTGTGTTCTCAGAATGGAGACTCCTCCACAACAATGACGTCTCTCTGCATGTGTTCCCTATGGCTGCCGCAACAAGGTTCATTGCTTTTTCTTTGTGTTGATGTGATGCTCTGTAGCCATTCCTCACCTGCATGACTAGGCAGTGTTACTGAGCACACTGATCCATGTACTTATATGATCACAGGCTTGGACAGACTAAAGAATGCAGCCAGGGTGTCTGAATTCTTGGAAGAACAAGGGGAAAACTTTTGTCTTCAGTCTTCCTATCAGTTGCTGGTTGCTAACACTTTGCTTTTTACAGTTCTAGCAATTTTTCACCTCACTAGAAGGATGCAACCTGCCCCATTTGTACAGCTCACACTTCTGAAATGTTGTGGTGCAGGATCAATGTTTTCCATCTTCTCTGCTTCATGGGATAAAAAGGATCTCAAAATTTGTGTTACTTGAGTTTTCCTCTCTTTCAGGTCTCCAAAGTCTGTGCAGACCTGTGTAACCTTTGTTATTCCACACATCCACTTGTTTGTTCTAAAATGTGCCGTCAGAGCTTTCCTATGAATCCATAATCCTTCTGAATCTTTTCATTGAAGGTTTCTTCCTGCAATACTACAGATTGCTCAGGATGTTGTGATTATGTTGTGTTAGAGTTATACACAAAAGCATCACATGCAAGGCATATGGTTTGAGCAGTTGATAGTACCAGATGATTTCCAGAAGCCCTTTGCCAAACTGAGTTATTTTATTATTCTGTGATATCTCCTGATAGATGTAAATTCAGACAAAGAGAGTATAATCCATGTACACTGTTTTTATTATTATTAATATTTTCTGTATGACAAAATCAGACTGCATGAGGAACATACAAATCTGCAGTCTCAGTTAGAATAAAGGAAAATGAATAATATATAACAATGCCATTAAATGCTATTAAGTGAGAACCATACCTTGCGGACAGAAAATATTGCATGCGAACCCCTCAGAAATCCATCCCTATCTTGTTCCTTTCATTTTCGTTTTCCTAAATTTTAG
Seq C2 exon
GAGCTACTGTTGAAACAATGCTGGAAAATATCAGTGTCAAGACAGACATGTTCCCTCCCTCTCCAAGCAAAATACCTGATGTGCATTTCTTTTACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006606:ENSGALT00000010664:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]