BtaINT0081114 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004023 | KIAA1324L
Description
KIAA1324-like [Source:HGNC Symbol;Acc:HGNC:21945]
Coordinates
chr4:33729105-33731045:+
Coord C1 exon
chr4:33729105-33729294
Coord A exon
chr4:33729295-33730948
Coord C2 exon
chr4:33730949-33731045
Length
1654 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
3' ss Seq
TCTTTTTCATTGTCATCTAGGAG
3' ss Score
8.86
Exon sequences
Seq C1 exon
GGGAAGAAGTTGGCTGTCTGTACCAACAATATAACAGACTTTACAGTAAAGGAAATGGTGGCAGGGTCAGATGATTACACGAATTTGGTAGGAGCATTTGTGTGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGTTTCCGAGCAGCCTTATCATCACAATCCATCATTCTGGCAGATACATTTTTGG
Seq A exon
GTAAGTTTCATTTGGTTCATATATTCATGCATGCATTTGTTTAAAATCATGGTACTGATAACTTGTCTCTGCAGTGGTGCTTACCATAGGTGATTAAAACCCACAGATAATTCTAAGTCATCACTTTATAACATGGTTTAGAACTCCCTACAAGTAAGATCTTTTGATCATTCTTAATGAGTAGTAGAAGCTTCCAGAGTTATGTATTAATTCATATGACATGTTTTTCTCTGGCAATCTGTGTCTTTCATCAGATTTTCTAGGAATTTTTGAGGTAAAATAATAACCTCCCAAACTGTGAGCAAAAGAAGAAGAGTAAACAAACACAATATAGACTTAAATCATAATATCTGTCACCAGCTTTTATCATCTTTTCTCATACCAGAGGAAATCTGGTGACAAACAGCAAGAGTGAGTGTGCTAAATTTTATTCTCCATCTTCCCTTTCTATTTCTAGTCTGGAAAGTATAGGAAACTTTAAAAAAAGTCAGGTCCCTAACTAGTTATTCTTAAGGATCTGGTTTATTAAAATATCTGGAGTAGAATTAGGGATCTAACAATGCATATGATAATCTAACAATTTAAAGAGCTTCTTAGATGATTCTAATCTGCAGCTAGATTTGAGAACCAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAGAGTCGGACACGATTGATCGACTTCACTTTCACTTTTCACTTTCCTGCATTGGAGAAGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCAGGGACAGAGGAGCCTAGTGGACTGCCATCTATGGGGTCACACAGAGTCAGACACGACTGAATTGACTTAGCAGTAGCAGTTATAGACTCTGGACTTCCCTGGTGGCTCAGATGGTAAAGCGTCTGCCTGAAATGTGGGACCCTGGGTTGGAAAGATCCCCTAGAGAAGTTAAGGGCAACCCACTCCAGTACCACTGATAGACTCCAGAAGAATTTAGCACCAAGGAGTTGCTATAATTTTCAGCACCAAGGACAGTTACTGAGTTTGTGCATCAGAACTCTTAGAACAAAGGTTGCTGTTATTGCTTGCATTTTGACTCTGCTATCATTTTGCATGGGGTTGATGGGTGGGGAATGCCTTGCTTTTAGATAAAATTTGAAGTTACTTTCTGGAAATATTTAGGGCACACAAAATTTTATTTTGTCAAATGTGTTTATAATGAATGTGAATGGATGAAAAGCTACATTAGCAAAGTAGCCCAGCTCATTCAACATAACTCACAAGAGGCTGAGAGTTATAATCGTAGATTGTTGAAATGTTAAAACTAGAAGGGACTATGCAGACCACCTAAATTATTGCATGCATTTTACAAATTCAGGACATAAGAATCAGGGAAGTAAAGTGACTAAAGCAAAATTGCAAAGTTAAGGAGTAGAGTATTTTTTATTCTGGAAACCTTGTAAGGTTTATTATTCTTACCAATAATACATGAATTTTACATGATATTTCTAGTTAAAATGACAGCCTCAAAGTAAAGCTGTTTTCTCTTTAGATATAGAGACTAAGTAAACCTAATTTTCCCATATTGCTTAATAGTTTCTTTTTCATTGTCATCTAG
Seq C2 exon
GAGTAACAGTTGAAACCACATTGCAAAATATTAATATAAAAGAAGATATGTTCCCAGTTTCACCAAGCCAAATACCAGATGTGCATTTCTTTTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004023:ENSBTAT00000005255:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAAGAAGTTGGCTGTCTGT
R:
AAATGCACATCTGGTATTTGGCT
Band lengths:
278-1932
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]