DreINT0142751 @ danRer10
Intron Retention
Gene
ENSDARG00000004386 | si:dkey-153k10.9
Description
si:dkey-153k10.9 [Source:ZFIN;Acc:ZDB-GENE-030131-3893]
Coordinates
chr4:9682325-9685103:+
Coord C1 exon
chr4:9682325-9682514
Coord A exon
chr4:9682515-9685006
Coord C2 exon
chr4:9685007-9685103
Length
2492 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
ACTGGTGTCTCCTTTCTCAGGAG
3' ss Score
8.89
Exon sequences
Seq C1 exon
GGGAGGAAGGTGGCAGTGTGCACTGATAACGTCACAGATATGTCCAGCAAGGACCTTCAGAATGAATCCGCTGACCTCAACAATTTTGTCGAGACTTTTGTGTGCCAATCGACCATCATCCCTGCAGATGGACGCGGCTTCAGATCAGCACTGTCATCTCAGTCCATCAGCCTGGCTGACACTTTTCTCG
Seq A exon
GTGAGCTGTTGTGAGAGAAAATTGGTAATCGATTGTATATGCTTTTGCTGAATCACTCTTTTCACACTAATTTAATTCACTGTATTTTTGAAACATTCATGCTAGGGCTGCATGATATTGGGAAAATATGACATTGCGATATCTTGTTTTTCGAAAAGGTTTTACCAGTTAACTTGAATAGCTAAAGAAAATAATAATAATTCTTTGATTTAGACAGATTGTGATGATTTTGTAGAGAGAGAATCGTGCATTGAATATAATAAACAAATTAAAAGCATAGGTAAATACAATAAAGCAAAGATAAAAGTGAAATAAACAGCACTTTATGGTTTTCTGGGGAGTCTAAAAGTATTCAGCTACAGAATTTAAATTATTAAAAGTAAAAAGAGCACAGTACTTTTCCATTGGATAAATAATTCAATAATGAAATGGTACAAATGGTACAGTTTCCTGTGCCTGAATGTTCACACAGTGACAGGCCATAAAAACACATGCAAATTATACACTTTCACTCCATCATGGTTAAACTCTGCAGTGACTCCACAAATATCAAGTGTTCTGAACTGTGGCTTCTGGTCAACCATAATCCTAACATATACATTCAACATTGCAGTATCGATGCTAAAACAATATATTGTGCAATCCTAGTTCATGCTCAGTAATGTATCTGGTGAAGAAAAACAACATTACCCATGATGCTATACAGAAAATTCAACCAATCAAAGTATTTCGAGAGCAATGTGTGCCAAAAGAGAACTTCATTTGTTTACCTCCATTAAGTTTTCTGTCATGCAAAGGCAACATGCAGGAACTTTGTGCTCAATTGAAAATGAGTTATTGATATTTTTGGGATACTTAAGACATATAACATATAACATACATGTTACTTTATAACATAGATATTTATCTTGAGTCAATCTTGTGTTTAAATAATTGTTATGCTTCTAATATCCTGACTAAAAATAATTTGGCTGAATAACAAATTGTTTAAAGTAATTTTCTTCCACATTCTGCAGAGAGCTAAAGTATTTTGCCTTTATAGGGTAGTGTTAAAATTGATACGAAATTTAATATATGTATATTTTACAATAAAGTTAAAAATATCTTGTTGACATAACAAACCTTAAACTAGTCGTTCTATATTTTGATATCATTTCTTTTCTTTCTTTCATTTGCAATTCTCCATGGGATTGCATTTTCGGTAACACTTTATAATAACTACACACTATGAACCATTTATTAAGCATAAGCAAATAGTGAATTCTTTTTTTGTTAAGCATTAACTCTACATTAATAAACGTTATTAAGCAGTTTATAACTGCAGCTATAAATGCTGTATTCTTGCTTTATAAATCCCTTATAAATGACAATTAAAGGCTCGGTATCAAATGAACAATAATCATTGCAATCTTATCTAAAAAGTAAATTTACTGTAAATATTAAACATCGCTGAATAACAGAAGTGTCAAAATACAACATAAAGTTGTATAAAACAAAAACAATAAAATAATTGAACAATATAAAAAGATGCAATGTTTAAACTCTACAGTAATTTTATTTTACATCAGGTTGCACAGATTTACTTTTCATTTAATACAGTTTCATTTGTGTATCATTAAATGAATAGAAACAAATGTTTTTTATTTACTTTTTCCTTTATAGAATTCAACTGACTCTTTAATTGTCATTTATAAGGCTTTTATAAAGCATGAATAGTCCTCACTTTAGATTAGGTCAAAATAAAGCATTTATTAACATATAAGTTAACTATTAGTATATGCCTTAATAATAAGATATATAAATGTTGATTTCAATAGTTTATTAATCATTTACTAACTCATTCTGAATGATCTTTAAAAAACACCAACTATGCTTAAATAACTGGTTAGTAAATAATGCAATACTTCCATTTAGTAATGAAAAATAAATCGATTACAAAGTATAAAAGTGCAATTATTATGCACATTATAAATGTGGTTATAGGTCAAGAATACAGCATTTATAGCTGCAGTTATAAACTGCTTACTAATGCTTATTAATGTAGAGTTAAATGCTTAACAAATAATGAATTCAACATTTGCTTATGCTTAATAAATCATTCATAGTGTGTAGTTATTATAAAGTGTTACCGCATTTTCTTCTCTCGTAAATCTGTTATCTGTTAATCTGTTTGTCAAATACCTCTGTGCTTTAAATGAAAGTCTGTAACACGATTCACTCTGTAGCTGCTTTTGGTTGATTGGTTTTGGTTGATTTGGTTTTACATCCTAAATAAAACTGAATAGAAAAATACTCACAGCTCCTAAAAAAAAGTAGGCAGACACTAATGTAATTTGATGTCAGCGTGTAATCTTGTTTTTGCTTAGAGATCAGCGTCAATGCCTTTTTCACGGTGCAACCCTTAACCTGTAAGAATCTGCAATGAAGGCTGTTTTAGTAAATAACATTTTTATGTTGCAGTTGTTATTGCTTACTGGTGTCTCCTTTCTCAG
Seq C2 exon
GAGCGTCTGTTGAAAGCAGTCTGGATGGGGTCACTGTAAACTCAGACCTCTTCCTCAAGTCTTCGCAGAAAGTTCCAGATATCAACTTCTTCTATCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004386:ENSDART00000004604:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]