RnoINT0122545 @ rn6
Intron Retention
Gene
ENSRNOG00000005818 | RGD1563349
Description
similar to RIKEN cDNA 9330182L06 [Source:RGD Symbol;Acc:1563349]
Coordinates
chr4:21600996-21602286:-
Coord C1 exon
chr4:21602100-21602286
Coord A exon
chr4:21601093-21602099
Coord C2 exon
chr4:21600996-21601092
Length
1007 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TGTTTTCCAATGTCATCTAGGAG
3' ss Score
7.42
Exon sequences
Seq C1 exon
GGGAGAAAGATGGCTCTCTGCACCAACAATATTTCAGATTTTACAGTAAAGGAGATGGTGACAGGGTCAGATGATTTGAATTTGGTTGGAGCATTTGTGTGCCAGTCAACTATTATTCCTTCAGAAAGTAAGGGCTTCCGGGCAGCCCTGTCATCCCAGTCGATCATTCTGGCAGATACATTTTTAG
Seq A exon
GTAAGTTTCCTTTGCTTAATATATGCATGTATGTGTTTGTTCTCATTTTATTGTAACAACAACTTATTAAAATACTCCTGTTAATAACACACAATTAAAGCGCGTGCATGTGTGTATACAAGTGCCCACGACCTCTTGCAAATAATAAAAATAAAAATTCTTTATAGAAAATCTAAGAAGCATGTAAGTCATCATATGTGCATACTACCGTGTTTCATTGTCTCCTCTTATCCCAGAAGGATGCTGGTTCCTTGAGTTTTGTTCCCTCTGTTTGAGGTTCTATAATATAGATAGGCTTTAAGAGCGATCCAGTTCTCTAGTGGTTCTTAGGAGTCAAATCCATTATAACTGCTGGGAGCAGTGAGACTATGGGGTTGTGAGACCTGATCTGAAAGCATTGCTGTGGACTCCATATGTAGTGCGCTTCAAACTTCAGCACCAAGGCCAGTTGCCAGACTCTCGGTAGAGGCTTGCGTTTCACACTGTTTTGTCTACTAGAAGGGAAACCCTGGTTTCCTGCTTAACCTGCTTAACCTTCTGGTTAAGCAAATCGGAACTTAAAAAAGTTAGCTGAACTACGGGCATGAGAGCATCAGGCTTGGCAAAACAAACATGTCTGTACTGAAGGAGAATAAATTCAACCCGTTTCTACTGCAAAACTCGGTGGCAGAGCACGACACTGTGATAGATTTCTGAAGCATTAGAGCCGGAAGGAACCATAGAAGTCATCTAAACCTCTGTATATTTCCTACGAGTTCTAGAAAAATAAAACAAAAGGACAAAACTTTCAGGGTAGTGAAATGAGCTAAGTTTCATGGCTGGGGATTAGAATCTTTTTTTTCTGGAGGTATTGGAAAGTTTCTTATTCTTATCAGGAATGTCTCCGTTTAACATTTCTGGTGAGGGGACAGTTGTCAGAGTAAAGCTATTTTGTACTCAGATGTACAGAGACTAAGTAAACCTAATCTCCCTCACTGCTTCAGAGTTTGTTTTCCAATGTCATCTAG
Seq C2 exon
GAGTCACAGTGGAAGCTTCCTTGCAAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCCAGCCAAGTTCCAGATGTGCATTTCTTCTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005818:ENSRNOT00000007723:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGAAAGATGGCTCTCTGC
R:
AAGAAATGCACATCTGGAACTTGG
Band lengths:
278-1285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]